Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01654 ATGGGTAGACGTAAAAGTAAACCACATCGATCAGGTGGGATAATACTAGAAACAAATGCTACTGCTGAAACAGAATTGGATAAGCAGAATGTTGTAGAAGCAGGAGAAGAAGCAAAGGATAGTTGTGGTGACATTGATAAACCTTATTTTGTGGAGGTTGACCGGTCCACTTGGTTGTCAAGTGAACACCTTGATATTTCTGAAGTTGTTTTAAGTGATTTGAATTTGAGAGAAGATTTTTCTGGTTTTGAACTGTCTGAGGATTTTTATCAAGATCCCCAATACTTGTTAAGATTTCGGGTGTGTAATGTTAGCAATGTTCTTGGTCGAATTAAATTAGGCCATTGGCCTGTGTTACCCTATACTGATATTCAGCTAGAGTTTGTAAAAAGAGCTACGGTTGACAATGTGGAATTATGTACAGTATTGCTATCTGGTACTTTTGATGGACCTGATGAAGGTGTTTCTGGTCTTGTTCACTTGGCAAGTTTGAAATTTGTCACATTGAGGGCTGTTCTTGGGATCAGGCTTTCTGAGGACATTACTTCCCTCAGGGTAAGGATTGAGGTACTAAAGAGTGCTTTCGATGCATGTGAGTCACTTCTTGAGGGTTCTAGACAACTATGGAAAAAGAGTATGGTGAATGTCATGTCTTGGCTACGTCCAGAAATAATGACTTCAGAAGTTAGGTATGGACTTGGTAGCTGTATGAAAATGGAAGTTGATCCACAAGTAGAGAAGGGAGACGACAGTTGCCATACCAGGAAACACGCGAGGTTTGATCCTGCAGGTTTTTATGAAGCCATTAAGCCTTCAAAAGCAGAACCAATGCTGGCAGATGACATACCTGAGTTACTTCCTGAACTGCGGCCATATCAACGGCGTGCAGCTTTCTGGATGGTAGAACGGGAGAAAGCAAGGGAAGAAAGTCAGGGTGAAAGAGAAAGAAATCTGTTTCATTCTCCATTATGTGTGCCTGTTGATTTTCTGGACACAAGTTCCAAAATGTTTTTCAATCCTTTCAGTGGAAATATTTCATTGTACCCAGAGACTTCTTCGCCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCCTGGGAAAAACTGTTGAATTGCTTGCTTGCATCTATGCTCACCGGAGATCAGCATCTGAAAGTGACATAATAATTGATTCAGTGCCGCCAGTTAACGAGGATAAAAAAGTCACTTTAAAAAGACTCAAAAGAGAGCGTGTGGAGTGCATATGTGGAGCTGTCAGTGAAAGTCTTAAATATCAAGGACTGTGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCAGGCTGTGTTGGTTATTCACCTAAAGGAAAATCACTAAAATCAAAACAAGGATGTGAAAGCAAGACATATAAAACTACCATAGCTGAGAGAGATGGGCAATATGTGTGTCAGATGTGCTCTGAACTAATACAAGTTACTGAATCTCCCATTGCCTCCGGTGCCACTCTCATTGTCTGCCCCGCTCCTATTTTGCCCCAGTGGCATGATGAAATTATACGTCACACGCGTCCAGGCTCCCTGAAAATTTGTGTTTATGAAGGCGTGCGAGACTCATCTTTGTCCAATACATCTCCAATGGATATTAGTGATCTTGCCAGTGCTGACATTGTAATAACTACATATGATGTGCTTAAAGAGGATTTGTCCCATGATTCTGATAGACATGAAGGTGATCGTCACTTTTTGAGATTTCAGAAAAGGTACCCAGTTATCCCAACTCTTCTTACCAGAATATACTGGTGGAGGGTTTGTTTGGACGAGGCTCAAATGGTGGAGAGTAATACTACTGCTGCCACTGAAATGGCTCTGAGACTCCATTCAAAGCATCGTTGGTGCATTACAGGGACCCCAATTCAGCGAAAGCTTGATGACTTGTATGGACTTCTAAGATTCCTTAAAGCTAGTCCTTTCGATATATACAGGTGGTGGACTGAAATTATTCGAGACCCTTATGAGAAGGGAGATATGGGAGCTATGGAATTTACACACAGAATTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTAGCAGATGAATTGGACCTTCCATCCCAAGAGGAGTGCCTCTCTTGGCTTACACTCTCACCAGTAGAAGAACACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCCCATGAAGTTATTGAAAGTTTGAGAAATGATATTCTTAGTAGAAGAGTCCCAGGTTCTGTATCTTTGAGTGGTTCCTCTGATCCTTTAATCACTCACACAGAGGCAGGGAAGCTACTGAATGCTTTACTCAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGTTCTGGGTTGCGTTCCCTGCAGCAGTCACCTATGACTATGGAGGAAATACTAATGGTTCTTATAGGCAAGACTAAGGTAGAAGGTGAGGAAGCTCTCAGGAGGTTAGTTGTTGCTCTGAATGGGCTTGCAGCAATAGCTATAATACAAAAAGAATTTTCTCAAGCTGCATTGCTGTACAATGAAGCTCTTACTTTGGCTGAAGAGCATTCTGAAGATTTCCGCCTGGATCCTTTGTTAAATATTCACATTCATCATAATCTTGCTGAAATACTCCCTCTGGCTACAAACTTTTCTTTGATATTGCCATCCAAAGGAAAACAATTCTCTGAAACCTCTGCAGTTAAAATGACCAGAAAGCATTTTATTGTAAAGGATGATCGTGGTCTTGTTAAGAGGCGTAAAATAAGTGGCAATGATGACATAAATTTAACAGTGGCTTCTGCAGAACCATCACAAGTTGCATCTAGCCTTTCTGAAAATGACTTAAATGAGGATGTGGAATTTGATAGTCTATCTGCCAGTTCTGTCCAATCTCTGATAGCAGAATGTGAAGATTCAAAACAGAAATACTTATCTGTGTTCAGTTCAAAGCTAACTGCAGCTCAACAGGAGTTTCAAAATTCTTACATGCAGGTTTGTAATGCATATCGTGACAGCAGAACAGATCAAAATACATTTTGGTGGTTAGAAGCACTTCATCATGCTGAGCAGAACAAGGATTTCTCAACTGAATTGATTAGAAAGATTGAAGAAGCCATCTCAGGAAGTTCAAACAATTCAAAATCATCAAGAATAGCTGCTCGTTTTCGGAGCATAAGCTCTCTTAAATATCAAATTCAGACAGGTTTGGATCAGTTGGAGGCCTCTAGGAAAGTGCTAGTAGATCGACTGTTAGAAATTGATCAGACAATGGAAAAACCAAAAGATGAAGATATTGAACGTGTGGGTAAATGTCGGAATTGTCAACCTAATTGTGATGGTCCCCCATGTGTTTTGTGTGAACTAGATGAGTTGTTTCAGGACTATGAAGCAAGACTCTTTGTTCTTAAGAATGAACGTGGAGGGATAATTTTATCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAAAATTTTGCGTTGAATCATTTTCTCTCAAAGCTATCACAATCTAATCACAGTTCAACAGTATCTGATATTGGTTATGAAGAATCTAAAAAACGGAATGTTGGACAAAGAGTTGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTTATTCTTGGAGTTATAAAGAACTATTGCAAGGCTCGGTTAGGAAGGGACAGTGCCTCAGCAGCCACCAAGCATTTACATGTTTTTGAGGGAATGCGAAAGGAGTTTGGTTATGCAAGGTCTTTGGCATTAACTCAAGCTCAATATCTGCGTGCCCATGATGAAATAAAGATGGCAGTTTCCCGTTTGCATCTAAGGACAAATGAAAATGATAAATCTCTTGATGCTTTAGGTGAAGATGAATTATATGCTGCAAGCTCAAACTATTCCCATGATAAGTTTATGTCATTGACATTGTTGTCACAGATAAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAACTGCCACTGGAAAGTCCAGATAGTTCTTCATTCACACAAGAGACAACTGCAGTGTCAAACTCTACGGAAGAGAAGGGTGCACTCATATCTAAAACTGATGAGGAAACATGCCCAGTTTGCCAAGATAAGCTAGGCAATCAGAGAATGGTATTTCAATGTGGGCATGTTACATGCTGTAAATGTTTATTTGCCATGACGGAGCAAAGACTTCAACATAGCAAGATTCATAATTGGGTGATGTGCCCTACATGTAGACAGCATACTGATTTTGGAAACATTGCTTATGCTGTTGATGCACAGAATGAAGCTTCCAATTCTTCAATGCTGCATACAATTGATAGCTGTGAAAAATGTGAAGCATCCATTAGTGTCAAAGGCTCATATGGAACTAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGGTAAAGGCTACAGATCATCAAGCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAACATGCCTTTGCAGCCAATGACATCACCTACATCCGGATGAAGGGAGGCAGAAAAGCACATGTTGCTATCAGTCAATTTAGAGGGAAACAGAATGGCACAAAAGGAACACCAAAACCTATTCAGGTGTTATTGCTTTTAATTCAACATGGAGCCAATGGCCTCAATCTTTTGGAAGCACAGCACGTAATTCTTGTAGAGCCATTACTCAATCCAGCTGCTGAAGCACAAGCGATCAGTCGAGTACATCGTATTGGACAAAAAAATAAGACCCTTATTCATCGTTTTATAGTAAAAGATACAGTTGAAGAGAGCATTTATAAATTAAACAGAAGCAGAAGCAACCATTCTTACATTAGTGGGAACACAAAAAATCAAGATCAACCTGTTTTGACTCTGAAGGATGTGGAATCTTTATTGGCAAGAGCGCCACTAACGATGCCAGAAAGTGATGAAAATCCTAATACAAATGCAAATCTAAGACACTTGCCACCATCAATGGCTGCGGCTATAGCTGCTGAGAGGAGACTTAATGAGCAAGGGACATGA 5004 0.4025 MGRRKSKPHRSGGIILETNATAETELDKQNVVEAGEEAKDSCGDIDKPYFVEVDRSTWLSSEHLDISEVVLSDLNLREDFSGFELSEDFYQDPQYLLRFRVCNVSNVLGRIKLGHWPVLPYTDIQLEFVKRATVDNVELCTVLLSGTFDGPDEGVSGLVHLASLKFVTLRAVLGIRLSEDITSLRVRIEVLKSAFDACESLLEGSRQLWKKSMVNVMSWLRPEIMTSEVRYGLGSCMKMEVDPQVEKGDDSCHTRKHARFDPAGFYEAIKPSKAEPMLADDIPELLPELRPYQRRAAFWMVEREKAREESQGERERNLFHSPLCVPVDFLDTSSKMFFNPFSGNISLYPETSSPYVFGGILADEMGLGKTVELLACIYAHRRSASESDIIIDSVPPVNEDKKVTLKRLKRERVECICGAVSESLKYQGLWVQCDICDAWQHAGCVGYSPKGKSLKSKQGCESKTYKTTIAERDGQYVCQMCSELIQVTESPIASGATLIVCPAPILPQWHDEIIRHTRPGSLKICVYEGVRDSSLSNTSPMDISDLASADIVITTYDVLKEDLSHDSDRHEGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNTTAATEMALRLHSKHRWCITGTPIQRKLDDLYGLLRFLKASPFDIYRWWTEIIRDPYEKGDMGAMEFTHRIFKQIMWRSSKEHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILSRRVPGSVSLSGSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLIGKTKVEGEEALRRLVVALNGLAAIAIIQKEFSQAALLYNEALTLAEEHSEDFRLDPLLNIHIHHNLAEILPLATNFSLILPSKGKQFSETSAVKMTRKHFIVKDDRGLVKRRKISGNDDINLTVASAEPSQVASSLSENDLNEDVEFDSLSASSVQSLIAECEDSKQKYLSVFSSKLTAAQQEFQNSYMQVCNAYRDSRTDQNTFWWLEALHHAEQNKDFSTELIRKIEEAISGSSNNSKSSRIAARFRSISSLKYQIQTGLDQLEASRKVLVDRLLEIDQTMEKPKDEDIERVGKCRNCQPNCDGPPCVLCELDELFQDYEARLFVLKNERGGIILSAEEAVDFQKKNFALNHFLSKLSQSNHSSTVSDIGYEESKKRNVGQRVVVSRSASELELILGVIKNYCKARLGRDSASAATKHLHVFEGMRKEFGYARSLALTQAQYLRAHDEIKMAVSRLHLRTNENDKSLDALGEDELYAASSNYSHDKFMSLTLLSQIKGKLRYLKGLVQSKQKLPLESPDSSSFTQETTAVSNSTEEKGALISKTDEETCPVCQDKLGNQRMVFQCGHVTCCKCLFAMTEQRLQHSKIHNWVMCPTCRQHTDFGNIAYAVDAQNEASNSSMLHTIDSCEKCEASISVKGSYGTKIEAVTRRILWVKATDHQAKVLVFSSWNDVLDVLEHAFAANDITYIRMKGGRKAHVAISQFRGKQNGTKGTPKPIQVLLLLIQHGANGLNLLEAQHVILVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESIYKLNRSRSNHSYISGNTKNQDQPVLTLKDVESLLARAPLTMPESDENPNTNANLRHLPPSMAAAIAAERRLNEQGT. 1668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01654 1667 SMART ultradead3 285 657 IPR014001 -
Seca7g01654 1667 ProSiteProfiles Zinc finger RING-type profile. 1358 1406 IPR001841 -
Seca7g01654 1667 CDD PHD_TCF19_like 416 481 - -
Seca7g01654 1667 Pfam SNF2-related domain 292 784 IPR000330 GO:0005524|GO:0140658
Seca7g01654 1667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 1622 IPR027417 -
Seca7g01654 1667 CDD SF2_C_SNF 1449 1582 - -
Seca7g01654 1667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 481 IPR013083 -
Seca7g01654 1667 Gene3D - 482 709 IPR038718 -
Seca7g01654 1667 CDD DEXQc_SHPRH 289 688 - -
Seca7g01654 1667 Gene3D - 345 397 IPR038718 -
Seca7g01654 1667 Pfam Helicase conserved C-terminal domain 1453 1571 IPR001650 -
Seca7g01654 1667 SMART PHD_3 414 482 IPR001965 -
Seca7g01654 1667 Gene3D - 1414 1653 IPR027417 -
Seca7g01654 1667 SMART helicmild6 1483 1571 IPR001650 -
Seca7g01654 1667 SMART ring_2 1358 1405 IPR001841 -
Seca7g01654 1667 SUPERFAMILY FYVE/PHD zinc finger 411 484 IPR011011 -
Seca7g01654 1667 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 4 1665 - -
Seca7g01654 1667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 687 IPR027417 -
Seca7g01654 1667 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1455 1622 IPR001650 -
Seca7g01654 1667 SUPERFAMILY RING/U-box 1353 1410 - -
Seca7g01654 1667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1329 1413 IPR013083 -
Seca7g01654 1667 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Seca7g01654 1667 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 465 650 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01654 Seca-Chr7 32027521 32049309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01654 489 782 RAD5 or RAD16-like Gene Family AT5G22750 31.773 1.29e-38 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca7g01654 SNF2_N 1.1e-87 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01654 K15710 - gmx:100776659 2917.87