Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01647 ATGAAGTTCCCAGTTTTTGTTGTTCCATTTGTTCTGCTAAGCTTCATACTATCTCTCTTTGGCTTGATTTTAGCTGACTTGAACTCTGACAGACAAGCTCTCCTTGAGTTTTCTTCTAATGTTCCACATGCTCCAAGGTTAAACTGGAATGACTCTACTCCAATTTGCACTTCATGGGTTGGTGTGACTTGTAATCCAAATGAGACTCAAGTAATTGGCATCCATCTTCCAGGGGTTGGATTCAAGGGCTCCATTCCAAATAACAGCCTAGGAAAACTTGATGCTCTCAGAATTCTAAGCCTTCATTCCAATGGCCTTAGTGGAAATCTTCCTTCTGACATTTTCTCCATTCCTTCACTCCAATATGTAAACCTGCAGCACAATAACTTCTCAGGCCTAATTCCTTCCTCTGTCTCCCCTAAACTCATAGCATTGGATATTTCCTTTAACTCCTTCTCTGGCAGTATCCCACCTACATTTCAGAATCTCAGAAGACTAACTAGCTTGTATCTCCAAAACAATTCCATCTCTGGAGCCATCCCTGACTTCAACCTTCCAAGGCTCAAATATTTGAATTTGAGCTATAATAACTTGAATGGCTCAATTCCAAATTCCATCAATCAATTCCCCTATACTTCTTTTGTTGGGAACTCTCTCTTATGTGGGCCACCTCTCAATCATTGTTCTGCAATCTCCCCTTCTCCATCTCCTTCTCCTGTTTACCAACCACTCTCTCCATCAACTTACCAAAATCAAAATGCTACCACTTCAAAGAAATTCTTTGGCCTTGCTTCTATCCTTGCTCTAGCAGTTGGGGGTTGTGCCTTCCTCTCTCTCCTAGTTTTGGTGATCTTTGTATGCTGTTTGAAGAGAAAAAAGAGTAAAAGCAGTACTAGTGGTATACTGAAAGGAAAGACATCTTGTGCTGGAAAGACTGAGGTTTCAATGAGTTTTGGGAGTGGGGTGCAAGAGGCTGAAAAGAACAAATTGTTCTTCTTTGAAGGTTGCTCTTATAGCTTTGACCTTGAAGATTTATTGAAGGCTTCAGCTGAAGTTCTTGGAAAGGGGAGCTATGGAACAACATACAAGGCTGCATTAGAGGAGGGAACAACAGTGGTAGTTAAAAGGTTGAGGGAAGTTGTGATTGGAAAGAAGGAGTTTGAGCAACAAATGGAGGTTGTGGGAAGAATTGGACGACACCCCAATGTGGTACCCCTTCGAGCTTATTACTATTCCAAAGATGAGAAACTTTTAGTTGATAACTACATGCCAGGAGGAAGCTTGTTTGCCTTGTTGCATGGAAACAGGGGTGCAGGAAGAACTCCATTAGACTGGGAAACAAGAATGAAGATTACACTTGGAGCTGCAAAAGGAATTGCTTCCATTCACAAAGAGGGGGGTCCAAGGTTTGCACATGGCAACATCAAGTCATCCAATGTTCTCATAACCCAAGAAGTTGATGGTTGCATCACTGATGTTGGACTAACTCCTCTAATCAACACCCCATCAACCATGTCAAGAGCCAATGGCTATTGTGCTCCAGAAGTGGCTGAGTCAAGGAAGATCACACACAAGTCTGATGTTTACAGCTTTGGGGTAGTCCTTCTTGAAATGCTTACAGGGAAGACCCCATTAGGATATGCTGGATATAATGACATAGTTGATCTTCCAAGGTGGGTGAGGTCTGTGGTTCGAGAGGAATGGACAGCTGAAGTTTTTGATAAGGAACTGTTGAGAGAGCAATATGTTGAAGAGGAGATGGTGCAGATGCTTCAGATTGCACTGGCATGTGTGGCAAAGGTGGCAGATAATAGGCCAACAATGGATGAAGTTGTTAGAAACATAGAGGAAATTAGGTACCCTGAGTTGAAGAATCGTACATCCTCTGAGTCTGAATCTAATGTACAAACACCATGA 1917 0.4225 MKFPVFVVPFVLLSFILSLFGLILADLNSDRQALLEFSSNVPHAPRLNWNDSTPICTSWVGVTCNPNETQVIGIHLPGVGFKGSIPNNSLGKLDALRILSLHSNGLSGNLPSDIFSIPSLQYVNLQHNNFSGLIPSSVSPKLIALDISFNSFSGSIPPTFQNLRRLTSLYLQNNSISGAIPDFNLPRLKYLNLSYNNLNGSIPNSINQFPYTSFVGNSLLCGPPLNHCSAISPSPSPSPVYQPLSPSTYQNQNATTSKKFFGLASILALAVGGCAFLSLLVLVIFVCCLKRKKSKSSTSGILKGKTSCAGKTEVSMSFGSGVQEAEKNKLFFFEGCSYSFDLEDLLKASAEVLGKGSYGTTYKAALEEGTTVVVKRLREVVIGKKEFEQQMEVVGRIGRHPNVVPLRAYYYSKDEKLLVDNYMPGGSLFALLHGNRGAGRTPLDWETRMKITLGAAKGIASIHKEGGPRFAHGNIKSSNVLITQEVDGCITDVGLTPLINTPSTMSRANGYCAPEVAESRKITHKSDVYSFGVVLLEMLTGKTPLGYAGYNDIVDLPRWVRSVVREEWTAEVFDKELLREQYVEEEMVQMLQIALACVAKVADNRPTMDEVVRNIEEIRYPELKNRTSSESESNVQTP. 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01647 638 SUPERFAMILY L domain-like 40 226 - -
Seca7g01647 638 SUPERFAMILY Protein kinase-like (PK-like) 351 615 IPR011009 -
Seca7g01647 638 ProSiteProfiles Protein kinase domain profile. 347 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g01647 638 ProSiteProfiles Leucine-rich repeat profile. 187 209 IPR001611 GO:0005515
Seca7g01647 638 Gene3D Ribonuclease Inhibitor 140 230 IPR032675 -
Seca7g01647 638 Pfam Leucine Rich Repeat 187 206 IPR001611 GO:0005515
Seca7g01647 638 Gene3D Ribonuclease Inhibitor 28 139 IPR032675 -
Seca7g01647 638 Pfam Leucine rich repeat 118 176 IPR001611 GO:0005515
Seca7g01647 638 FunFam Probable inactive receptor kinase RLK902 27 174 - -
Seca7g01647 638 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 423 629 - -
Seca7g01647 638 FunFam pollen receptor-like kinase 1 316 422 - -
Seca7g01647 638 Pfam Protein kinase domain 351 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g01647 638 Gene3D Transferase(Phosphotransferase) domain 1 423 637 - -
Seca7g01647 638 PANTHER OS05G0588300 PROTEIN 11 629 - -
Seca7g01647 638 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Seca7g01647 638 Gene3D Phosphorylase Kinase; domain 1 312 422 - -
Seca7g01647 638 ProSitePatterns Protein kinases ATP-binding region signature. 353 384 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01647 Seca-Chr7 31706427 31709011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01647 12 636 Receptor kinase-like Gene Family AT5G58300 59.906 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca7g01647 Pkinase 1.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01647 - - vum:124839146 992.26