Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01615 ATGAACATCCCCGACGGTGTCACCATCAAAGTGCACGCCAAGGTGATCGAGGTGGAAGGTCCACGTGGCAAGCTGGTGCGTGACTTCAAGCACTTGAACCTCGATTTCCAACTCATCACCGACGAGAACGGCAACAAGAAGCTCAAGGTTGAATCATGGTTCGGATCTCGCAAAACCTCCGCCGCTATCCGAACCGCACTCAGCCACGTCGAGAATCTCATCACTGGCGTCACCAAAGGTTACCGCTACAAGATGCGTTTCGTCTATGCTCACTTTCCAATTAACGCTAGCATCACCAACAGCAACACTGCCATTGTGAGGAAAGTGGATATGCTCAACGGTGTCATTGTTGTTCGATCTGAAAAGGTCAAGGATGAGTTGGTTTTGGATGGAAATGACATTGAGCTTGTTTCTCGATCTTGTGCCCTCATCAACCAGAAATGCCATGTTAAAAACAAAGATATCCGGAAGTTCCTTGATGGTATCTATGTTAGCGAGAAGGGAACAATACTTGAAGAGTAG 522 0.477 MNIPDGVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLITDENGNKKLKVESWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNTAIVRKVDMLNGVIVVRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTILEE. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01615 173 Pfam Ribosomal protein L6 3 80 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca7g01615 173 Pfam Ribosomal protein L6 107 161 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca7g01615 173 ProSitePatterns Ribosomal protein L6 signature 2. 146 167 IPR002359 GO:0003735|GO:0005840|GO:0006412
Seca7g01615 173 Gene3D - 82 173 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca7g01615 173 FunFam 60S ribosomal protein L9 81 173 - -
Seca7g01615 173 SUPERFAMILY Ribosomal protein L6 2 80 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca7g01615 173 SUPERFAMILY Ribosomal protein L6 81 167 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca7g01615 173 Gene3D - 1 81 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca7g01615 173 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 171 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca7g01615 173 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 170 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca7g01615 173 FunFam 60S ribosomal protein L9 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01615 Seca-Chr7 30570052 30571758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01615 1 173 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 78.804 3.01e-103 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01615 K02940 - gmx:100306058 317.39