Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01606 ATGACCTTTGCTTGTGGCATAACAAAACCCAGTTTTTTTATTGTCCAAACGGAAATGCCTATTCTAACATTTGGTCATTCTAAGTTGAGTGCTACCCTTGCTCTTCGGTTGCCATGTAACTGCTTCAGGAGGATGGGGTTGGTTACCAAGCTTCAGTATTCTGTTGCTAATAGGACATCAACTTCTAGCTCTGTTGATTCGCCGGCATCCAAACCGAAATCCGGTCCTGTGAGTAGGAGGCGTGGAGGTGCCTCGCCGTTGTATATTCGTCCTAGTTTATTTGAAATGAAGAAAGATAAGGAGAAAATGCGTGAAGAGGTTTATGAGTTCTTGCGTGGAATTGGTATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTGACAGTTGATGTTATGAGGGAGCGTGTGGATTTTCTTCATAGTTTGGGGCTCACAATTGAAGACATTAATAATTATCCACTTGTTCTTGGCTGCAGTGTCAAGAAGAACATGATTCCTGTGCTTGATTACCTTGGTAAATTGGGAGTCAGGAAATCCACGTTCACGCAGTTCTTGCAGAGGTACCCTCAAGTGCTCCATGCCAGTGTGGTTGTGGATCTTGTGCCGGTGGTCAAGTATCTTCAAGGGATGGATATCAAGCCCGATGATATTCCTCGTGTTCTTGAGAAGTACCCTGAAGTTCTAGGGTTTAAACTTGAGGGAACCATGAGCACATCGGTTGCTTATTTGATTGGAATTGGTGTGGGAAGAAGAGAAATTGGAGGTGTCTTAACTAGATATCCAGAGATTTTAGGGATGCGGGTTGGTAGAATCATCAAGCCTTTTGTTGAATATCTGGAAAACTTGGGAATTCCAAGGCTAGCTGTTGCTAGACTGATAGAGAAAAAACCTTACATTCTTGGATTTGATCTGGATGAGAAGGTGAAGCCAAGTGTGAAATCCCTTGAAGAGTTTAATGTTAGGCGAACATCACTTCCCTCTGTAATTGCTCAGTACCCTGACATCGTTGGAACTGACTTAAAGTCAAAGCTTGTCAACAAGAGAAATGTACTTAATGGTGTAATTGATTTGGATCCCGAGGATTTTGGCCGAATTGTTGAGAAGATGCCACAGATAGTTAGCCTCAGTAGTAAACCCATGCTGAAGCATGTTGATTTTCTTAAGGATTGTGGATTTTCCTTGCAGCAAATGAGGAAGATGATTGTTGGATGCCCTCAACTACTTGCTTTAAACATTGACATCATGAAGCTTAGCTTTGATTTCTTCCAAAGGGAGATGGAAAGGCCTTTGGAAGACTTGGTTACTTTCCCTGCATTCTTCACTTATGGTTTGGAGTCAACTATAAAACCTAGGCATAAGATGGTTGCCAAGAAAGCATTGAAGTGTTCTCTGGCATGGATGCTTAATTGTTCTAATGAGAAGTTTGAGCAACGAATGGAGTATGACACTATTGACATGGAAGAAATGGAAATGGAACCATCATTTGACATGAATTCATTGATGCAACCAAGGAGTGATGAATCAGATTCTGATTATGAAGACAGTGATGATGATTATGATTAG 1566 0.4157 MTFACGITKPSFFIVQTEMPILTFGHSKLSATLALRLPCNCFRRMGLVTKLQYSVANRTSTSSSVDSPASKPKSGPVSRRRGGASPLYIRPSLFEMKKDKEKMREEVYEFLRGIGIVPDELDGLELPVTVDVMRERVDFLHSLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTQFLQRYPQVLHASVVVDLVPVVKYLQGMDIKPDDIPRVLEKYPEVLGFKLEGTMSTSVAYLIGIGVGRREIGGVLTRYPEILGMRVGRIIKPFVEYLENLGIPRLAVARLIEKKPYILGFDLDEKVKPSVKSLEEFNVRRTSLPSVIAQYPDIVGTDLKSKLVNKRNVLNGVIDLDPEDFGRIVEKMPQIVSLSSKPMLKHVDFLKDCGFSLQQMRKMIVGCPQLLALNIDIMKLSFDFFQREMERPLEDLVTFPAFFTYGLESTIKPRHKMVAKKALKCSLAWMLNCSNEKFEQRMEYDTIDMEEMEMEPSFDMNSLMQPRSDESDSDYEDSDDDYD. 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01606 521 MobiDBLite consensus disorder prediction 60 84 - -
Seca7g01606 521 MobiDBLite consensus disorder prediction 493 521 - -
Seca7g01606 521 FunFam Transcription termination factor mterf4, chloroplastic 133 270 - -
Seca7g01606 521 Pfam mTERF 169 477 IPR003690 GO:0003690|GO:0006355
Seca7g01606 521 PANTHER CGI-12 PROTEIN-RELATED 168 388 IPR003690 GO:0003690|GO:0006355
Seca7g01606 521 Gene3D Transcription termination factor 3, mitochondrial 89 198 IPR038538 -
Seca7g01606 521 Gene3D Transcription termination factor 3, mitochondrial 271 486 IPR038538 -
Seca7g01606 521 SMART mt_12 399 430 IPR003690 GO:0003690|GO:0006355
Seca7g01606 521 SMART mt_12 183 214 IPR003690 GO:0003690|GO:0006355
Seca7g01606 521 SMART mt_12 219 250 IPR003690 GO:0003690|GO:0006355
Seca7g01606 521 SMART mt_12 327 359 IPR003690 GO:0003690|GO:0006355
Seca7g01606 521 SMART mt_12 431 462 IPR003690 GO:0003690|GO:0006355
Seca7g01606 521 SMART mt_12 147 178 IPR003690 GO:0003690|GO:0006355
Seca7g01606 521 SMART mt_12 364 394 IPR003690 GO:0003690|GO:0006355
Seca7g01606 521 SMART mt_12 86 117 IPR003690 GO:0003690|GO:0006355
Seca7g01606 521 SMART mt_12 255 286 IPR003690 GO:0003690|GO:0006355
Seca7g01606 521 SMART mt_12 291 322 IPR003690 GO:0003690|GO:0006355
Seca7g01606 521 FunFam Transcription termination factor MTERF4, chloroplastic 271 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01606 Seca-Chr7 30191195 30194965 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca7g01606 mTERF 9.7e-108 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01606 K15032 - gmx:100785223 819.305