Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01588 ATGGGGGAGGGAGAGAGCTTAGTGGAAGCAGAAGGAGAAGGGAGGGAGACAACATCAACATTAACAACATGGAACCTAGGAAAACACAGTCAGATAGTGCACTTATCGGAGAAGCTAATAAATGGGAACCTTAACTCCAAGATTGAGGCTGCCAGAGAAATCAGAAGGCTCGTTCGCAAATCTTCATCCTCCAAGACACGCTCCAAACTCGCCGCTGCTGGTGTCATTCAACCCCTTATCTTCATGCTCTCTTCTTCCAATCTCGATGCCCGTGAATCCTCTCTCCTTGCTCTCCTCAACCTCGCTGTTCGCAACGAACGAAACAAGATCAAAATAGTGGCAGCTGGTGTCATGCCTCCTCTGGTGGAGCTTCTCAAGATGCAAAATAGTAGTATGCGAGAATTAGCTACGGCAGCAATCTTGACACTCTCAGCCGCTGCACCCAACAAGCCCATTATTGCTGCTTCTGGAGCTGCACCTCTCCTTGTTCAGATTCTCAAATCAGGAAGTGTTCAAGGCAAAGTTGATGCTGTTACAGCCCTCCATAACCTTTCCACTAGCATTGAGAATTCCATTGAACTTCTTGATGCTAGTGCTGTTTCCCCTCTTATCAACCTCCTTAAAGAATGCAGGAAGTATTCCAAGTTTGCAGAAAAAGCCACAGCACTACTTGAAATCCTTTCCAACTCTGAAGAGGGACGAAACGCAATCTCAATTACAGATGGTGGAATTTTAACCCTAGTAGAGACAGTTGAAGATGGATCACGTGTCAGCACAGAGCATGCTGTTGGATCATTGCTATCATTATGTCTAAGCTGCCGGGATAAATACCGGGAACTGATTCTTAAAGAAGGAGCAATTCCGGGTCTGTTACGGCTTACAGTGGAGGGAACAGCTGAAGCTCAAGATAGAGCACGTGTGCTTCTGGATTTGCTTAGAGATTCTCCCCCAGAAAAAAGACTAGCCTCCTCAGTTTTGGAGAAAATTGTTTATGACATTGCTGAAAGGGTAGATGGAGTAGATAAAGCTGCTGAAACTGCCAAACGATTATTGCAAGATATGGTTCAAAGGAGCATGGAACACAGCATGAACTGCATCCAGCATAGAGCTGCATCTTGTACTCCTTCTGTGGTTCCATCCACTTGA 1146 0.4572 MGEGESLVEAEGEGRETTSTLTTWNLGKHSQIVHLSEKLINGNLNSKIEAAREIRRLVRKSSSSKTRSKLAAAGVIQPLIFMLSSSNLDARESSLLALLNLAVRNERNKIKIVAAGVMPPLVELLKMQNSSMRELATAAILTLSAAAPNKPIIAASGAAPLLVQILKSGSVQGKVDAVTALHNLSTSIENSIELLDASAVSPLINLLKECRKYSKFAEKATALLEILSNSEEGRNAISITDGGILTLVETVEDGSRVSTEHAVGSLLSLCLSCRDKYRELILKEGAIPGLLRLTVEGTAEAQDRARVLLDLLRDSPPEKRLASSVLEKIVYDIAERVDGVDKAAETAKRLLQDMVQRSMEHSMNCIQHRAASCTPSVVPST. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01588 381 MobiDBLite consensus disorder prediction 1 21 - -
Seca7g01588 381 Pfam Armadillo/beta-catenin-like repeat 105 144 IPR000225 GO:0005515
Seca7g01588 381 Pfam Armadillo/beta-catenin-like repeat 148 185 IPR000225 GO:0005515
Seca7g01588 381 Gene3D - 27 147 IPR011989 -
Seca7g01588 381 Gene3D - 148 235 IPR011989 -
Seca7g01588 381 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 158 IPR000225 GO:0005515
Seca7g01588 381 SUPERFAMILY ARM repeat 32 337 IPR016024 -
Seca7g01588 381 PANTHER U BOX DOMAIN-CONTAINING 30 314 - -
Seca7g01588 381 Gene3D - 236 372 IPR011989 -
Seca7g01588 381 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 198 242 IPR000225 GO:0005515
Seca7g01588 381 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 74 116 IPR000225 GO:0005515
Seca7g01588 381 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 157 199 IPR000225 GO:0005515
Seca7g01588 381 SMART arm_5 187 229 IPR000225 GO:0005515
Seca7g01588 381 SMART arm_5 146 186 IPR000225 GO:0005515
Seca7g01588 381 SMART arm_5 104 145 IPR000225 GO:0005515
Seca7g01588 381 SMART arm_5 63 103 IPR000225 GO:0005515
Seca7g01588 381 FunFam U-box domain-containing protein 4 12 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01588 Seca-Chr7 29750612 29755973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01588 16 314 U-box Gene Family AT3G54790 38.333 6.91e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01588 K08332 - gmx:100782472 590.497