Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01583 ATGGGCCTTTCAAGTCTCCCTGCACCATCTGAAGGAGTGTTATGTGTACTTCTGGTGAACACTGTATTGTCAATATCCATATTTAAAGGCATTGTCAGAACAATCCTACACATTGTTGGTATCCATCTTTCATCATCCTCCACTTCACCAGATGCTTCTCAAAACCAACCTGAGTCACTTGAATTCCATCTTAGTCCCTCTGAGAGTTACATTGAAGAGTTCAGAAGCAGGACACCAACACTCAGGTTTGACAGTGTGTGTTGCTGTAAACTACCTGAACATGATTGCTCTGTATGTCTCACTCAGTTTGAGCCAGAATCAGAGATAAACCGCTTATCCTGTGGCCATCTCTTCCATAAAGTATGCTTGGAGAAGTGGTTGGACTACTGGAACATTACATGCCCACTTTGCAGGACTCCCTTAATGCCTGAAGATGACACACCTTGCTTTTAG 453 0.4327 MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLSSSSTSPDASQNQPESLEFHLSPSESYIEEFRSRTPTLRFDSVCCCKLPEHDCSVCLTQFEPESEINRLSCGHLFHKVCLEKWLDYWNITCPLCRTPLMPEDDTPCF. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01583 150 PANTHER - 1 145 IPR044249 -
Seca7g01583 150 SMART ring_2 96 137 IPR001841 -
Seca7g01583 150 SUPERFAMILY RING/U-box 95 144 - -
Seca7g01583 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 146 IPR013083 -
Seca7g01583 150 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Seca7g01583 150 Pfam Ring finger domain 95 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01583 Seca-Chr7 29644310 29644762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01583 1 145 C3H Transcription Factor Family AT2G04240 64.286 5.65e-59 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01583 K16285 - gmx:100786803 298.13