Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01580 ATGAAGAAAACACCAGGCCCCAATTTTCATCAATCTAGCCAAAGAAAACAGATTGCTATTCTCCATGATATTACAAGCAATGATAAAAAGAGTCACAATCAGACTGCACTTCAATCTTTCAAATCTGCTGTCAAGAAATGTGCAGCTGTTTTTGCATTGATTTTCTCTGGCAAAAGAAAAAGAGCCTCAATAGTTGTTGGAAATGATGACAGACAGAATACATCAAAAGTCAGAGGTGTGGTATCATCTTCAACTGATTTGTCATCTGAAAGTACCAAGAATTCATCAAAATGGAAGTTTTCTTATTCCTATGCATCATCTAGCACTAAAAGTGGACAACTTGGTGTTGGGGAATTCACATATGAAGAAATTTACAAGTCAACTGCAAAATTCTCCCAAGACAATCAGATTGGGGAAGGTGGATTTGGAACAGTCTATAAGGGAAAGCTTAATGATGGATCTATTGTGGCTGTGAAGCGTACCAAGAAGGAGGTACTACACCATCACCTATATGAGTTCAAGAATGAAATAATCACCTTGTCAAAAATTGAGCATCTGAATCTTGTGAGGTTATATGGATATTTAGAGCATGGAGATGAGAAGCTTATTGTTGTTGAATATGTTGGTAATGGAACACTTCGAGAACATTTAGATGGCGTTTGGGGAGATGGACTAGAAATTGGTGAGCGGCTAGACATAGCAATTGATGTAGCTCATGCAATAACTTACCTTCATATGTACACAGATAATCCAATTATCCATAGAGACATCAAATCAACAAATATCTTAATCACTGAGAACCTAAGGGCCAAAGTGGCAGATTTTGGCTTTGCAAGATTATCTGATGACCCTGGTGCAACCCATATTTCAACTCAAGTTAAAGGAACAGCTGGATACATGGATCCTGAGTACCTAAGAACATTTCAACTCACTGAAAAGAGTGATGTTTATTCCTTTGGAGTATTGCTTGTTGAAATGATGACAGGAAGACATCCAATAGAATCAAAGAGACCAATTGAAGAGAGAGTGACAATCAGATGGGCAATGAGAATGCTGAAAAAAGGGGATGTTGTGTTTACCATGGACCCGAGACTGAGAAGAAGTCCAGCCTCTATCAGTGCAGTGAAGAAGGTTCTCAAGTTAGCTTCCCAATGCCTTGCATCTTCGAGACAAACAAGGCCACCTATGAAGAATTGTGCAGAGATTCTGTGGGGTATCCGTAAGAGTTTTAGAGAAGAAGCCATTTCTCATCCTCCTATTCCTTCTCACCACTCTGAAAATTTTCCTCAAAGAGAAAAGAATAAGCAGATGACATTTGGTATTGAAGATGATGACAGCTACAAATTTGCGTCTGCACCTAATCATATTCATTCATAA 1377 0.3849 MKKTPGPNFHQSSQRKQIAILHDITSNDKKSHNQTALQSFKSAVKKCAAVFALIFSGKRKRASIVVGNDDRQNTSKVRGVVSSSTDLSSESTKNSSKWKFSYSYASSSTKSGQLGVGEFTYEEIYKSTAKFSQDNQIGEGGFGTVYKGKLNDGSIVAVKRTKKEVLHHHLYEFKNEIITLSKIEHLNLVRLYGYLEHGDEKLIVVEYVGNGTLREHLDGVWGDGLEIGERLDIAIDVAHAITYLHMYTDNPIIHRDIKSTNILITENLRAKVADFGFARLSDDPGATHISTQVKGTAGYMDPEYLRTFQLTEKSDVYSFGVLLVEMMTGRHPIESKRPIEERVTIRWAMRMLKKGDVVFTMDPRLRRSPASISAVKKVLKLASQCLASSRQTRPPMKNCAEILWGIRKSFREEAISHPPIPSHHSENFPQREKNKQMTFGIEDDDSYKFASAPNHIHS. 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01580 458 ProSiteProfiles Protein kinase domain profile. 131 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g01580 458 SUPERFAMILY Protein kinase-like (PK-like) 112 406 IPR011009 -
Seca7g01580 458 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 106 427 - -
Seca7g01580 458 Pfam Protein tyrosine and serine/threonine kinase 133 403 IPR001245 GO:0004672|GO:0006468
Seca7g01580 458 SMART serkin_6 131 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g01580 458 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 95 207 - -
Seca7g01580 458 ProSitePatterns Protein kinases ATP-binding region signature. 137 159 IPR017441 GO:0005524
Seca7g01580 458 Gene3D Transferase(Phosphotransferase) domain 1 209 418 - -
Seca7g01580 458 CDD STKc_IRAK 137 403 - -
Seca7g01580 458 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 208 417 - -
Seca7g01580 458 Gene3D Phosphorylase Kinase; domain 1 89 207 - -
Seca7g01580 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01580 Seca-Chr7 29472246 29476504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01580 103 396 Receptor kinase-like Gene Family AT1G79620 44.186 2.19e-69 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Seca7g01580 PK_Tyr_Ser-Thr 5.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01580 - - gmx:100811511 717.998