Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01517 ATGGTAAGAGGAGGAAGTCATGGTGGGAATGGTGTTATAAAAACCAATAACCCTTCCATCATGGATCGATTTTCAGGTCCTCCTTTGACAGCCATAGACAGATTCTTATGGAATCAACAGAGCCACTTCTATCACCAAGAACAGGTAGAGAACATTGCAAGGAGCAACAACAATGCAAGTGTTTTTGCTGAGGAGTTCTTCACTTTTCCTTACTCAACCTATGGTTTTCTTTGGCCAAACACTCAAGAATCAAGCTTTGTTGATGGGGTCTTAGCAAAGGAAGAGGCTTTGAAGTGGAAAAACATCAACCAACAAAACCCCACATTGTGCTTGAAAGATATGAAAGTTTCAGGTAGGAATGCAAAAGTGGTGGGAAGGAGAATTAAGAAAGAGTCTAATAATGTATCCTTGATCAAAGGACAATGGACTGCTGAAGAAGACAGGAAACTTTTAAGGTTGGTGAAGCAATATGGTGACAGAAAATGGGCTCAAATAGCTGAGAAGTTAGAAGGAAGGGCTGGCAAGCAGTGTAGAGAGAGATGGCATAATCATTTGCGTCCTGATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAGGATATTAGTGGATACTCATTCCAGGATTGGGAATCGTTGGGCTGAGATAGCAAAGCTAATTCCAGGAAGAACAGAGAATGCAATAAAGAATCATTGGAATGCAACAAAAAGGAGGCAGAATTCAAAGAGAAAGAACAAGAAGACAGAGAGTACAAATGGAAAGCCAAAGTCTTCTATACTTGAAGACTATATCAAAAGCAAGAGTACAACTGTTATTACCACAACCACATTGCCCTCTGTTAGCTCCCAACAGGACCCTGCAGCATCAACAAACCAATTAAGCCTTTCACTCTCTGAACCCTCTGAGTCTTTTGCCAATGAGCTTCTCTTCATGCAACAAATTTTCACTGAGAATAATCAGAATCACCAATCACTTGTCAATGTTGAAGCCTCTAATAAGCACTCTAATAAGTCTTCAAGCTCCTACTTGGACTTTTATGGACATAATGTTTTTGAGGATGTCACAGAGTGTGGGGTTATCTATTCCATTCAATACCCTGCTGGTAACATGCAATTGGATGATAATCCTCTCCCTAGAGAGACTCCTACCTCCTCCATAAATTACCTTCCTTCAGATCTTTATCTCTCTCACTTGTTGAATACATAG 1206 0.4013 MVRGGSHGGNGVIKTNNPSIMDRFSGPPLTAIDRFLWNQQSHFYHQEQVENIARSNNNASVFAEEFFTFPYSTYGFLWPNTQESSFVDGVLAKEEALKWKNINQQNPTLCLKDMKVSGRNAKVVGRRIKKESNNVSLIKGQWTAEEDRKLLRLVKQYGDRKWAQIAEKLEGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVDTHSRIGNRWAEIAKLIPGRTENAIKNHWNATKRRQNSKRKNKKTESTNGKPKSSILEDYIKSKSTTVITTTTLPSVSSQQDPAASTNQLSLSLSEPSESFANELLFMQQIFTENNQNHQSLVNVEASNKHSNKSSSSYLDFYGHNVFEDVTECGVIYSIQYPAGNMQLDDNPLPRETPTSSINYLPSDLYLSHLLNT. 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01517 401 ProSiteProfiles Myb-like domain profile. 134 185 IPR001005 -
Seca7g01517 401 FunFam Transcriptional activator Myb isoform A 138 191 - -
Seca7g01517 401 CDD SANT 142 185 IPR001005 -
Seca7g01517 401 Gene3D - 138 190 - -
Seca7g01517 401 ProSiteProfiles Myb-like domain profile. 186 236 IPR001005 -
Seca7g01517 401 SUPERFAMILY Homeodomain-like 136 232 IPR009057 -
Seca7g01517 401 Pfam Myb-like DNA-binding domain 142 199 - -
Seca7g01517 401 PANTHER MYB PROTEIN-RELATED 130 254 - -
Seca7g01517 401 MobiDBLite consensus disorder prediction 235 260 - -
Seca7g01517 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 190 240 IPR017930 -
Seca7g01517 401 CDD SANT 193 236 IPR001005 -
Seca7g01517 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 189 IPR017930 -
Seca7g01517 401 SMART sant 190 238 IPR001005 -
Seca7g01517 401 SMART sant 138 187 IPR001005 -
Seca7g01517 401 Gene3D - 192 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01517 Seca-Chr7 28068231 28070492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01517 25 400 MYB Transcription Factor Family AT5G58850 40.334 8.03e-78 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g01517 Myb_DNA-bind_6 5e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01517 K09422 - aprc:113874412 401.749