Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01482 ATGTGCAGTGGTTCCAAGAGGAAAACTTCTCAAATTGGTTTGGTCATGGAGAATGAATATGGAAGAATAGAAGGGCTGCATCATAAAATTTCAGCTTTGCTTGAATTTTCAGCTGCGGATGACCTGATTGGTTTTAAAGATGCTGTTGAAAAGGAGGGTCATGATGTTGATGAGGTGGGTTTATGGTATGGAAGAAGGATTGGCTCAAATAAATTGGGTTATGAAGAGAGGACACCTCTCATGGTTGCTGCTATGTTTGGAAGCCTAGGTGTATCAACTTATATTCTTGGAACGGGTCGTGTTGATGTTAACCGGCCTAGTGGATCAGATGGGGCTACTGCTCTTCATTGTGCTGTTGCTGGGGGTTCTGTTGCATCCCCTGAGGTTGTCAAGCTTTTGCTTGATTCATCTGGTGATGTTAGTGTTGTTGATGCCAATGGTAATCGACCCCTTGACTTGATTGTGTCCATGGCTAATTCTATCTTCAATCCAAGGAAGAGGATGCTACAAGCCTTACTGAAGGGTACAGGTGGTGCTGATCAGGCATGTCTTTCAGTTCCGGAGGTGGTTGACCTAATTGATGAACAAAGACAAGATATGAACACACCTCGTGTTTCGAAAGATGGAACTGAGAAGAAAGATTATCCTGTTGATCTCTCCCTTCCGGATATAAAGAATGGAATATATGGTACAGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCTGGGGAAAATGCAAGGCGACGTGATCCTAGGAAATATCATTATAGCTGTGTCCCTTGTCCTGAGTTTAGGAAAGGATCCTGCAGCAAGGGGGATTCCTGTGAGTATGCACATGGTATTTTTGAGTGTTGGCTTCACCCTGCCCAGTACCGGACACGGCTTTGCAAGGATGAGAGTGCTTGCACAAGAAGGGTTTGTTTCTTTGCTCACAAGCCTGAAGAGCTTCGCCCCTTGTATGCATCTACCGGTTCTGCTATTCCTTCTCCCAGATCATATTCTTCTAGCACTTCGTCATTAGAGATGGGTTCAGTTAGCCCAATTGCACTTGGTTCTCCATCTGTGTTGATACCACCTACCTCAACACCACCTTTGACACCATCTGGAGCATCTTCTCCTGTTGGTGGAGCCATGTGGCAGACTCAGTCTAATATTTCAGTCCCTACCCTGCAGCTGCCCAAAAGCAGGTTGAAGACTGCATTAGCTGCTAGAGATATTGATTTAGATACTGAATTACTTGGACTCGAAAGACGTAGGCAACAGCTAATGATGGATGAGATATCTGGTCTTTCCTCTCCTTCCAACTGGAAAAATTCCATGCCTAACAGTCCATCTTTTCCTGTTTCTTTGGGTGATCATACTGGTGAACTAAATAGGCTTTCATGGGTGAAGCCTGCTAACCTTGAAGACATTTTTGGGTCTCTTGATCAATCAATTTTGCCTAATTTCCATGGAATCTCACAGTTACAATCTCCAACTGGAATCCAAATGCATCAGAATGTGAACCAGCAGCTTCGAAACTATTCTTCCGGCTTTTCCACTTCAAGTGTGATTGGATCACCTACCTTTAGGGTTGATCCATCTGGGGAAGCAGCCAAAACAGTGGCTTTGAATCCAAGAGCTGCTGCCTTTGCAAAACGGAGCCAGAGCTTTATTGAGCGCAGCGTGGTGAATCGTCATTCTGAACTTCCTTCACCTGTTACCTCTATAGCAGCAAAGCCTTCTACCTTTTCTGGCTGGGGCTCACCTGATGGAAAACTAGATTGGGCCATGAATGGAGAAGAACTAAATAAACTGAGGAAATCTTCTTCTTTTGGATTTCGAAGCAGCAATAGTCCTTTAACTATGGCTACAACAAGAGTGCCAACAAATATTGATGAACCAGATGTGTCTTGGGTTCATTCACTTGTGAAGGATGCTACCCCTCTGGAATCTGGTCAATTTAGTGTTGAAGATCAGCAAAAGCAACTGCAATGCCACCTTAACAATGGAACAGATGTGATTCCAGCTTGGTTGGAGCAACTGTACATAGAGCAAGAGCAAATGGTGGCATGA 2109 0.4414 MCSGSKRKTSQIGLVMENEYGRIEGLHHKISALLEFSAADDLIGFKDAVEKEGHDVDEVGLWYGRRIGSNKLGYEERTPLMVAAMFGSLGVSTYILGTGRVDVNRPSGSDGATALHCAVAGGSVASPEVVKLLLDSSGDVSVVDANGNRPLDLIVSMANSIFNPRKRMLQALLKGTGGADQACLSVPEVVDLIDEQRQDMNTPRVSKDGTEKKDYPVDLSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDSCEYAHGIFECWLHPAQYRTRLCKDESACTRRVCFFAHKPEELRPLYASTGSAIPSPRSYSSSTSSLEMGSVSPIALGSPSVLIPPTSTPPLTPSGASSPVGGAMWQTQSNISVPTLQLPKSRLKTALAARDIDLDTELLGLERRRQQLMMDEISGLSSPSNWKNSMPNSPSFPVSLGDHTGELNRLSWVKPANLEDIFGSLDQSILPNFHGISQLQSPTGIQMHQNVNQQLRNYSSGFSTSSVIGSPTFRVDPSGEAAKTVALNPRAAAFAKRSQSFIERSVVNRHSELPSPVTSIAAKPSTFSGWGSPDGKLDWAMNGEELNKLRKSSSFGFRSSNSPLTMATTRVPTNIDEPDVSWVHSLVKDATPLESGQFSVEDQQKQLQCHLNNGTDVIPAWLEQLYIEQEQMVA. 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01482 702 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Seca7g01482 702 SUPERFAMILY Ankyrin repeat 54 158 IPR036770 -
Seca7g01482 702 FunFam Zinc finger CCCH domain-containing protein 66 231 299 - -
Seca7g01482 702 PANTHER UNKEMPT FAMILY MEMBER 35 657 IPR045234 -
Seca7g01482 702 Pfam Ankyrin repeats (many copies) 76 134 IPR002110 GO:0005515
Seca7g01482 702 Gene3D - 30 174 IPR036770 -
Seca7g01482 702 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 298 IPR000571 GO:0046872
Seca7g01482 702 ProSiteProfiles Zinc finger C3H1-type profile. 278 300 IPR000571 GO:0046872
Seca7g01482 702 SMART ANK_2a 75 105 IPR002110 GO:0005515
Seca7g01482 702 SMART ANK_2a 110 142 IPR002110 GO:0005515
Seca7g01482 702 Gene3D - 273 336 - -
Seca7g01482 702 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Seca7g01482 702 SMART c3hfinal6 308 331 IPR000571 GO:0046872
Seca7g01482 702 SMART c3hfinal6 273 299 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01482 Seca-Chr7 27011550 27014833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01482 28 697 C2H2 Transcription Factor Family AT5G12850 39.065 1.33e-141 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca7g01482 Ank_4 6e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01482 - - aprc:113846970 1148.65