Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01457 ATGGCGGTTGGTGGTGAGAGGAGTTATGGGGACAGGAAGCGTAAAAGAGGGTCGACGAAGAGAAAGCTTCTTGTCAATGAAAGAGTTGAGGTGAAGAGTTTTGAAGAAGGTTTTATGGGGTCATGGCACCCAGGGGAAGTCGTTCGCTGTGGAAGAGAAAAACGACATATAAGATATGATAGTGTTCTTGATGTTGATGGAGTAAACTATGTCGTGGAAGCGGTGAGGGTTCCCAATGTTTTGGATGGTGTTAATTCTCCTTCAGTTTCTTGGAGTGAACGTGGGCGCATTAGACCCAAACCTCCCGTGATTGAGTTTGGAGAAAGGGACCTTTCATTTGGTCTCTGTGTTGATGTGAATTATCAGGATGCTTGGTGGGAAGGTGTTATATTTGATCACTGTGATCAAATGAATGAGAGGAGTGTGTTCTTCCCTGATTTGGGGGATGAAATGAAGGTTGGAATTCAACAACTGAGGATCACTCAGGACTGGGATGAAGTTACTGAGTATTGGAAGACAAGAGGGAAGTGGGTGTTTCTTGAATTATTTGAGGAGTGTGAGCAGGTATCTTTTATTGGAGCTTCAGCAAAGCAGATTTGGTATGATGTGAGAGTAAGAGAAGATTTTGAATCCATAAAAGACTGGTATTGCAATGTGAAAGACTTGTGGAGGAAACCTGTAGTGGAGGTAGTTGGTGACTATTATACCCTCACACTACAAGAAATCTTCCCATCCATAAACCTTTATGAGGATTTGTTGACAGGAATACCAGAACTGGAGTTATCTCAACCCATTGATAATAATCACAATGATTCTAGTCATAGTGATGTATCTGGCTCTGATTGTGATATGGATAAGAACTGTGATACCATAATTCTCATTCCAGAGGAACATGGTACTGATCATTCATTTGACTCTGATTCTGGATCTGAAAAGCCTAAAGAAAATTGTGATAGTATCATTCCAATCCAAGAGGAATATGATACTGACAACGCCCTTTGTGATACTAATCACAATAATGTATTGGGTTCTGACATTGCAATAAGCGAGAGCCTTGAGGAAAAAGATGATACTGATCTAAACTGTGGGAACATCATTCCCAATGAAGAGCAATATGGTACAAATCCTATGGTTGAAGGGGAACTTGAGAAGGATATTCCTTTATCTCCACTTCAAGAGGACTTTCCTGAGTCTGAAACAGAAACTACAAGCGATGATGATGATGTTGAAGAAAATTCAGGTTCTAGCAGTTTTGTAAAAAGAAATAAACGTAGGTGCTCAGCGTCCATAACTTGGAATATTCTGACGCTGGATGATGTTGAACCCTTCCCTGATGTTATTGATGAATATATAGCTGGATGTAGGAGCAAGACGATTAGGGAACAATTGAAGACAAAAGTAAAACAACATCTTACATATCTTGGATGGACAATTGAATGGACTTTGAATAAACATGATCCTCAAGTAAAAAGATACAGGTACAAGTCACCTGATGCAAATGACCAGAAGCTTTACAACTCAATTTTGAAAGTACTTAAATCTATAAAAAGGCAAGAGAAGTCAAACATGAACTCTGTGCAGCCCCAAATTGACAATAGTATGCATTCTCCAATTGATGACAACCTTTCACATTTGCTTTCTGATCAACCCCAAATGAACCAGGATTTAGGTGTTAATCCTACAACGGGGGAAGCTTCTCCTGTCAAAGCTGATATTGAACCTGAATTGTGTCCTCAAGCTGTTGTCAAATATTACTTGCATGCATTAGAGAACCAACAAGCTGATAAAAGAAAATGGAAATTGAAAGCAAAGAAGCATCTGTTAGCAGAAGGATGGATGTTTAGTTACCCAACTGATAATAGGAAGACAACTTTGTATACGTCTCCGCAAAATCAGTTGCTAGGCACACTTCGCGGTGCTTGCAGACTATACATTAAGGAAAAGATTCCTGAATGGACTGCTTCTAGCAGACCTTTGAATGTATTAGACACTGATAAGGCAAGTGTTGATCATGTTAATGATGGTGATGATCTATTGCAGTGTGTGTACCAATTGCTTCAGAAAGAGCCTGAATTACATGACATAGATGGTTTACCAGCAATCAGACCAACTGGGAATAGAAACAACAAACACACCAAGAAGTCAAAGGCAAAGTTCCGGAGGGTATTATTACCTATGCAGGTGCTAAGAACATGCAAAAAGGTGCAACAGTTGTCTGCCCCTAGTATGGAACCAAAAAATCCTCAAAATGTTCTGTCTTGGTTAATAGATAATGAAATGGTGTTGCCAAGAAATAAGGTCTTTTGTTGGGAAAATGGAGATAGGAACACTCCTGAGTTCGTGGGGAGGATTACTCGGAATGGGATAAAGTGTAGGTGTTGTCATAAGCTATATGGTCCTGCTGGTTTTGTGAATCATGCAGGAGGAGGTGACAACCGCATGCCTTCAGCGAGTATATTTTTGAAAGATGGAAGGTCATTGTTTGATTGCATGGTACAAGTAATGCATGATCATAGGACAAGGGAAATCATTGAGACACCAGGTAGTAATCTATTGGAAGGTGAAAATGACATTGTTTGTACTGTCTGTAACGATGGTGGTGAAGTCCTTTTATGTGACAAATGCCCCTCAGTATTTCATAAGAAGTGTCTTAACATGGAGGACATCCCTGATGGTGACTGGTTTTGCCCATTATGTCGTTGCGGGATCTGTTGCCAAATCAAATTTGAAGGGACTAAGCATGCAGATCTGATTACTTGTGTTCAGTGTGAGCATAAATATCACATTGGATGCTTGAAAAGTAGACCTAATGATCAATCAACAAAATACCTGAAACATTGGTTCTGCGGTAAAGAGTGTGAACAGGTATATGTTGGCCTGCATGATATTTTGGGAAAGCCATTTACAGTGAGCGAGAAAAACCTAACCTGGACACTGATTAAGTGGGAAGACCCAGAGAATGGTGAAGTTGGAAGTGCTGAAAATGACTTGCTGGCAGAGACTTACAGCAAACTTAATGTTGCTTTGTCAGTAATGCATGAGTGTTTTGAGCCCCTCAAGAACCCTTTCTCTAATAGGGATCTTGTTGATGATGTTCTATTCAACAGAAGGTCGAAGCTCAATCGACTGAATTTTCAAGGTTTCTATACTATACTTCTGGAGAGAGATGAAGAAATGATTAGTGTGGCAACTCTTAGGGTGTTTGGAGAGAAGGTAGCAGAATTACCTCTTGTTGGTACTAGAGATCGGTTTCGCCGAAAAGGAATGTGTGGAATCTTAATGGCTGAGCTTGAAAAGAAGCTGGCCGAACTAGGAGTGGAGAGGCTAGTGTTGCCAGCTATTCCTAGTGTTCTGAATTCGTGGAAAAATACTTTTGGCTTCTTAGAAATGACGGATTTTGAGAGAGCACAATTTTTGGACTGTGCTTTCTTAGATTTCCAGGGAACTATAATGTGTCAGAAGCTATTAAAGAGGGTTCCTTCTCCAAATTCATCTTTAATAGGAGAAACAGATCCAAAAGAGCAATAA 3528 0.4011 MAVGGERSYGDRKRKRGSTKRKLLVNERVEVKSFEEGFMGSWHPGEVVRCGREKRHIRYDSVLDVDGVNYVVEAVRVPNVLDGVNSPSVSWSERGRIRPKPPVIEFGERDLSFGLCVDVNYQDAWWEGVIFDHCDQMNERSVFFPDLGDEMKVGIQQLRITQDWDEVTEYWKTRGKWVFLELFEECEQVSFIGASAKQIWYDVRVREDFESIKDWYCNVKDLWRKPVVEVVGDYYTLTLQEIFPSINLYEDLLTGIPELELSQPIDNNHNDSSHSDVSGSDCDMDKNCDTIILIPEEHGTDHSFDSDSGSEKPKENCDSIIPIQEEYDTDNALCDTNHNNVLGSDIAISESLEEKDDTDLNCGNIIPNEEQYGTNPMVEGELEKDIPLSPLQEDFPESETETTSDDDDVEENSGSSSFVKRNKRRCSASITWNILTLDDVEPFPDVIDEYIAGCRSKTIREQLKTKVKQHLTYLGWTIEWTLNKHDPQVKRYRYKSPDANDQKLYNSILKVLKSIKRQEKSNMNSVQPQIDNSMHSPIDDNLSHLLSDQPQMNQDLGVNPTTGEASPVKADIEPELCPQAVVKYYLHALENQQADKRKWKLKAKKHLLAEGWMFSYPTDNRKTTLYTSPQNQLLGTLRGACRLYIKEKIPEWTASSRPLNVLDTDKASVDHVNDGDDLLQCVYQLLQKEPELHDIDGLPAIRPTGNRNNKHTKKSKAKFRRVLLPMQVLRTCKKVQQLSAPSMEPKNPQNVLSWLIDNEMVLPRNKVFCWENGDRNTPEFVGRITRNGIKCRCCHKLYGPAGFVNHAGGGDNRMPSASIFLKDGRSLFDCMVQVMHDHRTREIIETPGSNLLEGENDIVCTVCNDGGEVLLCDKCPSVFHKKCLNMEDIPDGDWFCPLCRCGICCQIKFEGTKHADLITCVQCEHKYHIGCLKSRPNDQSTKYLKHWFCGKECEQVYVGLHDILGKPFTVSEKNLTWTLIKWEDPENGEVGSAENDLLAETYSKLNVALSVMHECFEPLKNPFSNRDLVDDVLFNRRSKLNRLNFQGFYTILLERDEEMISVATLRVFGEKVAELPLVGTRDRFRRKGMCGILMAELEKKLAELGVERLVLPAIPSVLNSWKNTFGFLEMTDFERAQFLDCAFLDFQGTIMCQKLLKRVPSPNSSLIGETDPKEQ. 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01457 1175 ProSiteProfiles Zinc finger PHD-type profile. 857 902 IPR019787 -
Seca7g01457 1175 SMART PHD_3 859 900 IPR001965 -
Seca7g01457 1175 SMART PHD_3 901 953 IPR001965 -
Seca7g01457 1175 Pfam Agenet domain 27 102 IPR008395 -
Seca7g01457 1175 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 995 1156 IPR000182 GO:0016747
Seca7g01457 1175 ProSiteProfiles Zinc finger RING-type profile. 860 900 IPR001841 -
Seca7g01457 1175 SMART agenet_At_2 109 166 IPR014002 -
Seca7g01457 1175 SMART agenet_At_2 21 83 IPR014002 -
Seca7g01457 1175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 851 901 IPR013083 -
Seca7g01457 1175 Gene3D - 998 1116 - -
Seca7g01457 1175 MobiDBLite consensus disorder prediction 696 716 - -
Seca7g01457 1175 Pfam Tify domain binding domain 782 833 IPR032308 -
Seca7g01457 1175 SUPERFAMILY FYVE/PHD zinc finger 841 900 IPR011011 -
Seca7g01457 1175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 902 956 IPR013083 -
Seca7g01457 1175 CDD PHD2_CHD_II 859 899 - -
Seca7g01457 1175 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1036 1138 IPR016181 -
Seca7g01457 1175 PANTHER PHD FINGER PROTEIN 12 574 1160 IPR042163 GO:0003714|GO:0045892
Seca7g01457 1175 Pfam PHD-finger 859 901 IPR019787 -
Seca7g01457 1175 CDD NAT_SF 1051 1111 - -
Seca7g01457 1175 SMART ring_2 860 899 IPR001841 -
Seca7g01457 1175 SMART ring_2 901 956 IPR001841 -
Seca7g01457 1175 MobiDBLite consensus disorder prediction 391 418 - -
Seca7g01457 1175 MobiDBLite consensus disorder prediction 398 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01457 Seca-Chr7 26063762 26070120 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01457 23 243 PHD Transcription Factor Family AT5G58610 44.395 1.22e-55 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca7g01457 Agenet 2.6e-13 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01457 - - adu:107471457 1135.94