Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01456 ATGGCGGTTGATGGTGAGAGGAGTTATGGGGACAGGAAGCGTAAAAGAGGGTCGACGAAGAGAAAGCTTCTTGTCAATGAAAGAGTTGAGGTGAAGAGCTTTGAAGAAGGTCTTTTGGGGTCATGGCACCCAGGGAAAGTCATTCGTTGTGGGAGACAGAAGCGACATATAAAATATGACAATGTTCTTGATGATGATGGAGTAAACTATGTTGTGGAAGCGGTGAGGGTTCCCAATGTTTTGGATGGTGTTAGTTCTCCAATTTCTTGGAGAGAACGTGGGCTCATTAGACCAAAACCTTCTGTGATTGAGTTTGGAGAAAGGGACCTTTCATTTGGTCTTTGTGTTGATGTGAATTACCAGGATGCTTGGTGGGAAGGTGTTATATTTGATCACTGTGATCAAATGAACGAAAGGAGTGTATTCTTCCCTGATTTGGGGGATGAAATGAAGGTTGGAATTCAACAGCTGAGGATCACTCAGGACTGGGATGAAGTTACTGAGGATTGGAAGACAAGAGGGAAGTGGGTGTTTCTTGAATTGTTTGAGGAGTGTGAGAAGATATCCTATGTTGGAGCTTCAGCAAAGCAGATTTGGTATGATGTGAGAGAAAGAGAAGATTTTGAATCCATAAGAGACTGGAGTTGTAATGTTAAAGACTTGTGGAGGGTCCTTGTAGTGGAGGTAGTTGGTGACTATTATACCCTCACACTACAAGAAATCTTCCCATCCATAAACCTTCATGAGGATTTCTTAAGAGGAACACCAAAATTGGAGCTATCTCAACCCATTGATAATAATCACAATGATTCTAGTCACAGTGATTTATCTTGCTCTGACTGTGGAATCAACAAACACACTAGGAAGACAAAGGCAAAGTTCCAGAGGGTATTATTACCTATGCGGGTGCTAAGAATAAGCAAAAAGGTGCAACAGTTATCTGCCCCTAGTATGGAACCAAAAAATCCTCAAAATGTTATGTCTTGGTTAATAGATAATGACATGGTGTTGCCAAGAAATAAGGTCTTTTATTGGGCAAATGGAGACAGGAACACTCCTGAGTTCGTGGGGAGGATTACTCGGGATGGGATAAAATGTAGGTGTTGTCATAAGCTATATGGTCCTGCTGGTTTTGTTAATCATGCAGGAGGAGGTGACAACCGCATGCCTTCAGCGAGTATATTTTTGAAAGATGGAAGGTCATTGTTTGATTGCATGGTACAAGTAATGCGTGATCGTAGGACAAGGGAAATCAATGAGACACCAGGCAATAATCTGTTGGAAGGTGAAAATGACAACGTTTGTACTATCTGTAACGATGGTGGTGAAGTCCTTTTATGTGACAAATGCCCCTCAGTATTTCATAAGAAGTGTCTTAACATGGAGGACATCCCTGATGGTGATTGGTTTTGTCCATCATGTCGTTGCGGGGTCTGTGGCCAAATCAAATTTGAAGGGACTAAGCATGGAGATCTGATTACTTGTGTTCAGTGTGAGCATAAATATCATGTTGGATGCCTGAAAAGTAGACCTAATGATCAATCAACAAAATACCTGGAACATTGGTTCTGCGGTAAAGAGTGTGAACAAGTATATGCAGGCCTGCATGATATTTTGGGAAAGATAGTTACAGTGGGTGAGAAAAACCTAACCTGGACATTGATTAAGTGGGAAGACCCAGAGAATGGTGAAATTGGAAGTGCTGAAAATGACTTGCTGGCAGAGACTTACAGCAAACTCAGTGTTGCTTTATCAGTAATGCATGAGTGTTTTGAGCCCCTCAAGAACCCTTTCTCTAACAGGGATCTTGTTGAGGATGTTTTGTTTAACAAAAGGTCGAAGCTCAATCGACTGAACTTTCAGGGTTTCTATACTATACTTCTTGAGAGAAATGAAGAAATGATTAGTGTGGCAACTCTTAGGGTGTTTGGAGAGAAGGTAGCAGAATTACCTCTTGTTGGTACTAGAGGTCGGTATCGCCGAAGTGGAATGTGTGGAATCTTATTAGATGAGCTTGAAAAGAAGCTGACCGAACTAGGAGTGGAGAGGCTAGTGTTGCCCGCTGTTCCTAGTGTGCTGGATTCATGGAAAAATACTTTTGGCTTCTCAGAAATGACAGATTTTGAGAGAGCACAATTCTTGGACTGTGCTTTCTTAGATTTTCAAGGAACTATAATGTGTCGGAAGTTGTTAAATAAGGTTCATTCTCCAGATTCAGCTTTAACAAGAGAAACAGATCCAAAAGAGCAACAAGATGGTTTCTCTTTTAAATGTAGATTTGAATTTGACAAGTCTAGTTCAGCATCAGAAGTAGACCAAATAGAGGAGATTGAAAAAAGTGGAATGGTGGATCTAATGGAGAAGGAGACAGAGAAAGTGAATATATGA 2388 0.4104 MAVDGERSYGDRKRKRGSTKRKLLVNERVEVKSFEEGLLGSWHPGKVIRCGRQKRHIKYDNVLDDDGVNYVVEAVRVPNVLDGVSSPISWRERGLIRPKPSVIEFGERDLSFGLCVDVNYQDAWWEGVIFDHCDQMNERSVFFPDLGDEMKVGIQQLRITQDWDEVTEDWKTRGKWVFLELFEECEKISYVGASAKQIWYDVREREDFESIRDWSCNVKDLWRVLVVEVVGDYYTLTLQEIFPSINLHEDFLRGTPKLELSQPIDNNHNDSSHSDLSCSDCGINKHTRKTKAKFQRVLLPMRVLRISKKVQQLSAPSMEPKNPQNVMSWLIDNDMVLPRNKVFYWANGDRNTPEFVGRITRDGIKCRCCHKLYGPAGFVNHAGGGDNRMPSASIFLKDGRSLFDCMVQVMRDRRTREINETPGNNLLEGENDNVCTICNDGGEVLLCDKCPSVFHKKCLNMEDIPDGDWFCPSCRCGVCGQIKFEGTKHGDLITCVQCEHKYHVGCLKSRPNDQSTKYLEHWFCGKECEQVYAGLHDILGKIVTVGEKNLTWTLIKWEDPENGEIGSAENDLLAETYSKLSVALSVMHECFEPLKNPFSNRDLVEDVLFNKRSKLNRLNFQGFYTILLERNEEMISVATLRVFGEKVAELPLVGTRGRYRRSGMCGILLDELEKKLTELGVERLVLPAVPSVLDSWKNTFGFSEMTDFERAQFLDCAFLDFQGTIMCRKLLNKVHSPDSALTRETDPKEQQDGFSFKCRFEFDKSSSASEVDQIEEIEKSGMVDLMEKETEKVNI. 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01456 795 CDD PHD2_CHD_II 434 474 - -
Seca7g01456 795 PANTHER PHD FINGER PROTEIN 12 288 781 IPR042163 GO:0003714|GO:0045892
Seca7g01456 795 SMART PHD_3 434 475 IPR001965 -
Seca7g01456 795 SMART PHD_3 476 528 IPR001965 -
Seca7g01456 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 477 531 IPR013083 -
Seca7g01456 795 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 616 713 IPR016181 -
Seca7g01456 795 ProSiteProfiles Zinc finger PHD-type profile. 432 477 IPR019787 -
Seca7g01456 795 SMART ring_2 435 474 IPR001841 -
Seca7g01456 795 SMART ring_2 476 531 IPR001841 -
Seca7g01456 795 SMART agenet_At_2 108 165 IPR014002 -
Seca7g01456 795 SMART agenet_At_2 21 83 IPR014002 -
Seca7g01456 795 SUPERFAMILY FYVE/PHD zinc finger 416 475 IPR011011 -
Seca7g01456 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 426 476 IPR013083 -
Seca7g01456 795 Pfam Agenet domain 27 100 IPR008395 -
Seca7g01456 795 Gene3D - 567 735 - -
Seca7g01456 795 Pfam PHD-finger 434 476 IPR019787 -
Seca7g01456 795 Pfam Tify domain binding domain 357 408 IPR032308 -
Seca7g01456 795 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 570 731 IPR000182 GO:0016747
Seca7g01456 795 CDD NAT_SF 626 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01456 Seca-Chr7 25817674 25822565 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01456 302 679 PHD Transcription Factor Family AT5G58610 45.833 3.76e-109 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca7g01456 Agenet 2.4e-13 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01456 - - var:108323857 706.057