Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01446 ATGTCTTGCTCCGTCGCAGTTTCGAATTCGCCGGTGTTCTCTCCTTCTTCCTCCCTCTTCTGCTCGAAGCCTTCTATAATCTCTTCTTCCCCTGAAGCTCTAACCCTTTCTCTCTCTCACCTAAAGCCAAATTCTTCTTCTACGGCGTCGTCTTGTTCTTCCCCTTCTGCTTGTTCTTCCCCCTCTTCCCCTTTTCGTCTTCGCCTTCCCAAACCCCCAACAGTTTTCTCCGCTCCTTCCTCTTCTGCCTCCTCTACCTCTCCAAACGGCACCGTTTTGAAGAGGAAGAGACCAGCGAGGCTTGATATACCCGTTAGTTCTCTCACCTTTGGGGTTCCGGCGACGCCGTCGGCGATGGCAAGGGATGACCTTGAGGCTGAGGGAGATGGGTTTTCTGTGTACTGCAAAAGAGGAAGGAGGGAGTACATGGAGGATCGTTACACCGCTGGGGATAATCTACGCGGAGAACACAAACTGGCTTTTTTTGGCATATTTGATGGACATGGAGGTGCAAAAGCAGCTGAGTTTGCTGCTAATAACTTAGAAAAGAATGTCTTGGATGAGGTGATCATGAGTGATGATGATGATATTGAGGAGGCAGTGAAGCGTGGTTACCTCAACACAGATTCAGATTTCTTGAAAGAGGATCTCCATGGTGGCTCATGCTGTGTAACAGCTTTGATTAGAGATGGTAACCTTGTTGTGTCCAATGCTGGTGATTGCCGAGCTGTAATAAGCAGAGGAGGTATTGCTGAGGCCCTAACATCTGATCATAGACCTTCAAGGGAAGATGAAAGGGACAGAATTGAGACCCTGGGTGGCTATGTTGATTTATGCCGTGGTGTTTGGAGGATCCAAGGATCACTGGCTGTATCTAGGGGAATTGGAGATAGACACCTGAAACAATGGGTGACAGCAGAGCCTGAGACCAAAGTTATCAGAATTGAACCTGAACATGACTTGTTAATATTAGCTTCAGATGGATTATGGGATAAGGTTAGTAATCAGGAAGCAGTAGATATTGCTCGTCCTTTATGTGTAGGGAACAACAAACCACAGCCATTGTTGGCATGTAAAAAGCTTGTAGATTTATCTGTTTCAAGAGGCTCTATGGATGATACAAGTGTTATGCTAATCAAATTGGAGCACTATGTTTGA 1158 0.4637 MSCSVAVSNSPVFSPSSSLFCSKPSIISSSPEALTLSLSHLKPNSSSTASSCSSPSACSSPSSPFRLRLPKPPTVFSAPSSSASSTSPNGTVLKRKRPARLDIPVSSLTFGVPATPSAMARDDLEAEGDGFSVYCKRGRREYMEDRYTAGDNLRGEHKLAFFGIFDGHGGAKAAEFAANNLEKNVLDEVIMSDDDDIEEAVKRGYLNTDSDFLKEDLHGGSCCVTALIRDGNLVVSNAGDCRAVISRGGIAEALTSDHRPSREDERDRIETLGGYVDLCRGVWRIQGSLAVSRGIGDRHLKQWVTAEPETKVIRIEPEHDLLILASDGLWDKVSNQEAVDIARPLCVGNNKPQPLLACKKLVDLSVSRGSMDDTSVMLIKLEHYV. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01446 385 ProSiteProfiles PPM-type phosphatase domain profile. 130 381 IPR001932 -
Seca7g01446 385 Gene3D - 130 384 IPR036457 -
Seca7g01446 385 FunFam probable protein phosphatase 2C 25 123 384 - -
Seca7g01446 385 MobiDBLite consensus disorder prediction 69 98 - -
Seca7g01446 385 ProSitePatterns PPM-type phosphatase domain signature. 161 169 IPR000222 GO:0043169
Seca7g01446 385 PANTHER PROTEIN PHOSPHATASE 2C 75 379 IPR015655 GO:0004722|GO:0006470
Seca7g01446 385 SMART PP2C_4 120 379 IPR001932 -
Seca7g01446 385 Pfam Protein phosphatase 2C 131 373 IPR001932 -
Seca7g01446 385 CDD PP2Cc 130 381 IPR001932 -
Seca7g01446 385 MobiDBLite consensus disorder prediction 75 92 - -
Seca7g01446 385 SUPERFAMILY PP2C-like 131 382 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01446 Seca-Chr7 25125451 25127497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01446 1 385 PP2C-type Phosphatase Gene Family AT2G30020 65.414 1.44e-174 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01446 K17506 - gmx:100797934 608.216