Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01437 ATGCTGAACAATTCCGATTCACCCAACTCGCCCACCAACCCACTGAGTCAACTCGCTCGGAAAATGTTCTCCGACGACGACGACAACAACAACAGCATCATGCTCGCCGCCATCATTTCCTTGCTCCTTGTCATCCTCTTCGTTCTGCTCCTCCACGTGTACGCCAAGTGGTTCTTATCTCACGCTCACGCACAATCCCAGTCACAGGCTCGCCGCCGGCGACGTCGCCGGCGAACTCCGGTGACCGTCTCCAGCGTTCCGGGGCCGTCCCAATTCCACCAGATCAACATAGAAACCTCACCCATCTCGTCCAAAGGACTCGACTCGGCGATAGTTTCGGCGATTCCCATGTTTGTGATTGAAGCTGAAGCAGAGGAAGAAACAGAGGAATTGGAATGTGTGATTTGTTTGAGTACTTTTGAGGAAGGAGAGATTGGAAGGTGTTTACCAAAATGTGGCCACGTTTTTCATGTGGAATGCATTGATATGTGGTTAAGTTCTCATTGCAATTGTCCAATTTGTAGAAATCCTATTGATCAAAACGATTCCCAATTGGGTTCTGTTGATGATGGTGTGGTTGAGATTGTGATTGATACTCCAAGTTATGAGAGTGAGCGTGGGAGAGATTCTTCATCAGAAACATCACTGTCTTTGTTGGGTTGTTCTTTGAAGAGAATGCTGAGCAAGGTTTTTCTGTCTTCCCATGTAAATCAAGTAGATGGTTCAGAATAA 732 0.4727 MLNNSDSPNSPTNPLSQLARKMFSDDDDNNNSIMLAAIISLLLVILFVLLLHVYAKWFLSHAHAQSQSQARRRRRRRRTPVTVSSVPGPSQFHQINIETSPISSKGLDSAIVSAIPMFVIEAEAEEETEELECVICLSTFEEGEIGRCLPKCGHVFHVECIDMWLSSHCNCPICRNPIDQNDSQLGSVDDGVVEIVIDTPSYESERGRDSSSETSLSLLGCSLKRMLSKVFLSSHVNQVDGSE. 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01437 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 180 IPR013083 -
Seca7g01437 243 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 185 - -
Seca7g01437 243 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Seca7g01437 243 SMART ring_2 133 174 IPR001841 -
Seca7g01437 243 SUPERFAMILY RING/U-box 120 181 - -
Seca7g01437 243 Pfam Ring finger domain 132 175 IPR001841 -
Seca7g01437 243 CDD RING-H2_EL5-like 133 175 - -
Seca7g01437 243 FunFam RING-H2 finger protein ATL1 94 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01437 Seca-Chr7 24837287 24838018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01437 30 179 Rapid Response to Elicitors AT3G16720 38.667 1.38e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01437 - - aprc:113874423 286.574