Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01404 ATGGCTCAATGCTCTGAGGCACTGGATGCTCCACCAGCTATGGGGTGCTTCTTGATGACTGGTGGAAGGAACAGAGGAAGAATTGGAATCATTGAGAGGGGAGAAAAGCATATGGGTAAACCTTTGACACCATCAACAGTCCAAGATGCTGTTGGTAATGAGTCTGCAACTCTCCTAGAAAACATTGTCATAATTGGTAAAGGCTCAAAACCATGGGTCTTTATGCCCAAAGAAAAGGGCATTAAGTTGATCATCATTGAAGAGGCAAGGTTGAGACATGAGGCAGAAAGGGCTTCCTTGATGTGA 306 0.4477 MAQCSEALDAPPAMGCFLMTGGRNRGRIGIIERGEKHMGKPLTPSTVQDAVGNESATLLENIVIIGKGSKPWVFMPKEKGIKLIIIEEARLRHEAERASLM. 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01404 101 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 18 90 IPR000876 GO:0003735|GO:0005840|GO:0006412
Seca7g01404 101 Gene3D - 15 82 IPR014722 -
Seca7g01404 101 Pfam 40S ribosomal protein S4 C-terminus 49 95 IPR032277 -
Seca7g01404 101 CDD KOW_RPS4 18 66 IPR041982 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01404 Seca-Chr7 23985040 23985714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01404 18 99 Cytoplasmic Ribosomal Protein Gene Family AT5G07090 56.098 3.56e-24 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01404 K02987 - cave:132187795 69.707