Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01390 ATGGCCACAGACGCGAGGGCCAAATTCCAGAACCCGGATTTCCGACCCGATTTCCATCCGGACTTAACGGTTTCAACTCACGACGGCCTCCACTTCTGGCAGTTCATGATCGCCGGATCTATCGCCGGTTGCATTGAACACATGGCAATGTTCCCCGTTGACACCGTTAAGACCCACATGCAAGCCCTCGGTTCTTGCCCTATCAAATCCGTTACGGTCCGTCAAGCTTTCCGTTCCATTCTTCAATCGGAGGGTCCCTCCGCTTTCTACCGCGGCATCGGAGCCATGGGGCTCGGTGCTGGACCTGCTCACGCCGTTTATTTCTCCGTCTATGAGACCTGCAAGAAGCGATTCTCAGATGGGAACCCGAATAACGCCGTTGCTCACGCCGCTTCTGGCGTCTGCGCAACCGTCGCGAGCGACGCCGTTTTCACGCCGATGGATATGGTTAAGCAGAGGCTTCAGCTGAGTAACAGCGGGTATAAGGGTGTGTGGGATTGTGTGAGGAGAGTTATGAGTGAGGAAGGGTTTGGAGCGTTCTACGCGTCGTATAGGACAACGGTTTTGATGAATGCGCCGTTCACGGCGGTGCATTTCGCCACCTATGAGGCGGCGAAGCGGGGACTCATGGAGGTGTCGCCGGAGAGCGTTGACGATGAACGGTTGGTTGTTCATGCCACGGCTGGAGCTGTTGCTGGTGCTTTGGCTGCTGCGATTACAACTCCACTTGATGTGGTTAAAACTCAATTGCAGTGCCAGGTAGGCGTCTGTGGATGTGATAGGTTCAAAAGTGGTTCAATTGGGGATGTTGTTAAAACAATAGTAAAAAAGGATGGGTACAGAGGGCTCATGCGAGGATGGATTCCAAGGATGCTCTTTCATGCTCCTGCAGCTGCTATTTGTTGGTCTACATATGAAGCTGGAAAGTCCTTTTTCCAAGATTTCAATCAGCAGAAAGATACTGGCACTGTCACCTAA 978 0.5266 MATDARAKFQNPDFRPDFHPDLTVSTHDGLHFWQFMIAGSIAGCIEHMAMFPVDTVKTHMQALGSCPIKSVTVRQAFRSILQSEGPSAFYRGIGAMGLGAGPAHAVYFSVYETCKKRFSDGNPNNAVAHAASGVCATVASDAVFTPMDMVKQRLQLSNSGYKGVWDCVRRVMSEEGFGAFYASYRTTVLMNAPFTAVHFATYEAAKRGLMEVSPESVDDERLVVHATAGAVAGALAAAITTPLDVVKTQLQCQVGVCGCDRFKSGSIGDVVKTIVKKDGYRGLMRGWIPRMLFHAPAAAICWSTYEAGKSFFQDFNQQKDTGTVT. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01390 325 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 311 IPR018108 -
Seca7g01390 325 Pfam Mitochondrial carrier protein 221 314 IPR018108 -
Seca7g01390 325 Pfam Mitochondrial carrier protein 30 120 IPR018108 -
Seca7g01390 325 Pfam Mitochondrial carrier protein 125 211 IPR018108 -
Seca7g01390 325 Gene3D Mitochondrial carrier domain 126 325 IPR023395 -
Seca7g01390 325 FunFam Mitochondrial RNA-splicing protein MRS3 11 158 - -
Seca7g01390 325 FunFam Mitochondrial RNA-splicing protein MRS3 159 323 - -
Seca7g01390 325 PANTHER MITOFERRIN-1-RELATED 27 315 - -
Seca7g01390 325 SUPERFAMILY Mitochondrial carrier 28 306 IPR023395 -
Seca7g01390 325 ProSiteProfiles Solute carrier (Solcar) repeat profile. 30 117 IPR018108 -
Seca7g01390 325 PRINTS Mitochondrial carrier protein signature 139 157 IPR002067 GO:0055085
Seca7g01390 325 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Seca7g01390 325 PRINTS Mitochondrial carrier protein signature 48 62 IPR002067 GO:0055085
Seca7g01390 325 PRINTS Mitochondrial carrier protein signature 181 199 IPR002067 GO:0055085
Seca7g01390 325 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Seca7g01390 325 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 208 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01390 Seca-Chr7 23761441 23765438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01390 1 321 Chloroplast and Mitochondria Gene Families AT1G07030 74.468 3.99e-173 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01390 K15113 - gmx:100802640 606.675