LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca7g01380	ATGGCTGAGGTTTTACTTGGACTCGTGTTCGAGAAGTTGCTCTCTTTGATTCAGAATGAATTTGCAACCATGCCTCGAATCAAGGAAAAGGCTGAAAAGTTATTAAGCACTTCACAGCTGATCAAGGTCGTCCTTCAAGATGCTGAGGAGAAACAAATGACAGAAAAACCTGTTAAGCTTTGGCTGCAGAAACTCAAAGATGCTGTGTATGTGTTAGATGATATCCTTGATGAATGCTCCATTGAATCTCATCGACTTAGGGGTCCATCCTCTTTCAAACCAAGGAACATCGTGTTTCGTTATAGGATTGGCAACAAGTTGAAAATGATTTCAAGGAGATTTGATGAAATTGCTGAAAGTAAAAACAAAATTTTTCTGAGAGAGCATGTTTGGGAAAGGTCAGGTAGAGTGGCAGAATGGCGTGAAACCACTCCTACCATTATCCAACCTCAGATATATGGACGTGATGATGATAAAGAGAAGATTGTGGAGTTTCTTCTCAACCAAGCACGTGCCTCTGACTTCCTTTCCATCTATCCCATCGTTGGCTTAGGTGGTGTTGGAAAGACAACTCTGGCTCAAATGGTCTACAATGATGATCGGGTACGTAGTACTTTTAACACACAAATTTGGATTTGTGTTTCAGAGGATTTCTCTCTCAAGAGGATTTTGTGTTCTATTATAAGATCTATCTCAGATGAAAAGTGTGATGTTTGGGATTTACATAAAATAGGAAGAGAAGTGCAGGAATTGTTGCAAAGTAAAAGATACTTACTTGTTTTTGATGATGTGTGGAAAATGAATCAAGAATTGAAATCCGGATTAACCCAAGACAAGTGGAACAAGTTGAAATCCTTGTTATCATGTGGATCCAAAGGTGCTTCTATTTTGGTATCCACTCGTGATAGAGATGTTGCAACAATCATGGGAACATGTCAAGCTCATCATTTGTCCTGTCTCTCTGACCATGAATGTTGGTTGTTATTCAAACAATGTGCATTTGCCAACAGAGAAGAGCGTGAAGAGCTTGTAGCTATAGGCAAGGAGATAGTAAAGAAGTGTGGGGGATTGCCTCTTGCAGCACGAGCATTAGGAAGTTTATTGTACACAAAGAGTGAGGAAAAGGAGTGGCTTGAAGTTAAAGAAAGCAGGCTTTGGGATTTACAAGATGAAAATTCTATTTTGCCTGCCTTGAGGTTGAGCTATGTTCATTTGATGCCAGCCTTAAAACAATGTTTTGCTTTTTGTGCCATATTTCCCAAAGATGAAGAAATTATGAAGGAAGATCTGATTCACCTTTGGATGGCCAATGGGTTTATTTCATCCATGAGATACTTGGAGGTAGAAGATGTTGGCAATATGATTTGGAATGAATTGGACCAAAAATCATTCTTCCAAGATATCAAGATCAATTATGAAGGAGACATTTCTTTCAAGATGCATAATCTTATCCATGATCTTGCTCAGTCAGAGTGGATGGTTTTCGGGAATTCAAATGTGACTGATTCATTGACACAAGGATTTCTAACTGAGAAAATTGAATCCTTGCGAACATTACATGTCTCAGAAGTTAATGACACAAGGATTTCTAGTTGCTTTCATTCTCTTCGGGTTTTAAGGACATGTTCTTTCACGTTGTTATCATCACTTGCGAATTTAATTCATTTGAGGTATTTGGAGCTCTATGATTTACTTGAGATAGAAACCCTTCCTGACTCAATTTATAGCTTGCAGAAATTGGAAATCTTGAAATTGAAACGACTTCGTGATCTTCTGTGTCTACCAGAACACTTGACCTGCTTACAAAATCTGAGACATCTCATCGTTGAAGATTGTCTGTCATTGTCTCAGACCTCTCCTAACATTAGAAAATTATGTTGCCTAAAATCACTAACTGTGTACATTGTCGATTCAAAGACAGGGCATAGCTTGGCAGAATTACGTGATTTAAATCTAGGTGGAAAGCTGAGCATTGAAGGCCTTGCTAATGTTGGCAGTTTATCTGAAGCTAGAATGGCCAATTTGATAGGTAAAAAGGACCTTAAAAAATTATGCTTGTCATGGTACAAGTACTGGGACCATACTGGTAAAACCAAGTCATTTGCTGAGAAAGTAATTGAAGTGCTTCAACCTCCCCCAAATCTCAAGTCCCTAGAGATATCCAATTATCATGGATTATGCTTGCCAGGTTGGATCATGAATCTTAATAGTTTAGTTGATCTTAAACTTATTCATTGCTATTACTGCTTACAAATTCCGTCCCTTGCTAAACTGCCATTTTTAAGAAAACTTGAAATAAGGATTATGCATGATGTGCAATACGTGGATGATGATGAATGTTACGATGGTGTGGAGGTAAGGGCTTTCCCATCTTTGGAGGAACTCTATTTAGATAGGTTACCAAAGTTAGAGCGGTTGTTGAAAGTGGAAAAGGGGGAAATGTTCCTCCGTCTTTCTAATGTTACCATCCTTGATTGCCCTAAACTTTGGTGGCCATGCCTCCTATCTGTTAAATGTCTCAAAGTAAAAGGATGTAAAAATGAGTTGCTGAAGTCAATCGCTAGTATGTACAATCTTACCTCCCTTCACCTTGAGTATGGTTTTGGTGGTGAAGAACTCACATGCTTCCCACCCGAGGGAATGTTGAGAAACCTGACTTGTCTTCAAACTCTGGTAATAGATTCTTTCCCGGAAATGAAGGAATTATCAAGTGAGCTCTTCAACCTTATCGCTTTAGAGGATCTGTCAATCAGATGCTGTCATGAGCTTGAGTCTTTACCGGAGCAAGGTTGGGAAGGTCTTTGCTCCCTTCAATATCTTTCATTTTATGATTGTGGAGGATTGAGATCCTTGCCTGATGGTATTCAACATCTCACTTCACTTCACCGTCTAACCATTTCGGGCTGCCCAGCTTTGAAGAAGTGGTGTAAGGAGGGAACAGGAGAGGATTGGGACAAGATAGCACACATTCTAGACAAACATATTATTCAGTGA	2994	0.3918	MAEVLLGLVFEKLLSLIQNEFATMPRIKEKAEKLLSTSQLIKVVLQDAEEKQMTEKPVKLWLQKLKDAVYVLDDILDECSIESHRLRGPSSFKPRNIVFRYRIGNKLKMISRRFDEIAESKNKIFLREHVWERSGRVAEWRETTPTIIQPQIYGRDDDKEKIVEFLLNQARASDFLSIYPIVGLGGVGKTTLAQMVYNDDRVRSTFNTQIWICVSEDFSLKRILCSIIRSISDEKCDVWDLHKIGREVQELLQSKRYLLVFDDVWKMNQELKSGLTQDKWNKLKSLLSCGSKGASILVSTRDRDVATIMGTCQAHHLSCLSDHECWLLFKQCAFANREEREELVAIGKEIVKKCGGLPLAARALGSLLYTKSEEKEWLEVKESRLWDLQDENSILPALRLSYVHLMPALKQCFAFCAIFPKDEEIMKEDLIHLWMANGFISSMRYLEVEDVGNMIWNELDQKSFFQDIKINYEGDISFKMHNLIHDLAQSEWMVFGNSNVTDSLTQGFLTEKIESLRTLHVSEVNDTRISSCFHSLRVLRTCSFTLLSSLANLIHLRYLELYDLLEIETLPDSIYSLQKLEILKLKRLRDLLCLPEHLTCLQNLRHLIVEDCLSLSQTSPNIRKLCCLKSLTVYIVDSKTGHSLAELRDLNLGGKLSIEGLANVGSLSEARMANLIGKKDLKKLCLSWYKYWDHTGKTKSFAEKVIEVLQPPPNLKSLEISNYHGLCLPGWIMNLNSLVDLKLIHCYYCLQIPSLAKLPFLRKLEIRIMHDVQYVDDDECYDGVEVRAFPSLEELYLDRLPKLERLLKVEKGEMFLRLSNVTILDCPKLWWPCLLSVKCLKVKGCKNELLKSIASMYNLTSLHLEYGFGGEELTCFPPEGMLRNLTCLQTLVIDSFPEMKELSSELFNLIALEDLSIRCCHELESLPEQGWEGLCSLQYLSFYDCGGLRSLPDGIQHLTSLHRLTISGCPALKKWCKEGTGEDWDKIAHILDKHIIQ.	998

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca7g01380	997	Pfam	Rx N-terminal domain	6	99	IPR041118	-
	Seca7g01380	997	SUPERFAMILY	L domain-like	479	825	-	-
	Seca7g01380	997	Gene3D	-	401	491	IPR036388	-
	Seca7g01380	997	Pfam	NB-ARC domain	156	401	IPR002182	GO:0043531
	Seca7g01380	997	PANTHER	DISEASE RESISTANCE PROTEIN RP	41	807	IPR044974	GO:0006952
	Seca7g01380	997	Gene3D	-	319	400	IPR042197	-
	Seca7g01380	997	Gene3D	-	6	118	-	-
	Seca7g01380	997	PRINTS	Disease resistance protein signature	354	368	-	-
	Seca7g01380	997	PRINTS	Disease resistance protein signature	178	193	-	-
	Seca7g01380	997	PRINTS	Disease resistance protein signature	251	265	-	-
	Seca7g01380	997	PRINTS	Disease resistance protein signature	956	972	-	-
	Seca7g01380	997	FunFam	Probable disease resistance protein At1g63360	402	490	-	-
	Seca7g01380	997	Gene3D	Ribonuclease Inhibitor	499	825	IPR032675	-
	Seca7g01380	997	Gene3D	-	140	314	IPR027417	-
	Seca7g01380	997	FunFam	Probable disease resistance protein At1g61300	135	314	-	-
	Seca7g01380	997	SUPERFAMILY	RNI-like	789	971	-	-
	Seca7g01380	997	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	136	416	IPR027417	-
	Seca7g01380	997	Gene3D	Ribonuclease Inhibitor	830	980	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca7g01380	Seca-Chr7	23474694	23477687	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca7g01380	181	767	WRKY Transcription Factor Family	AT5G45050	23.102	4.94e-09	58.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca7g01380	-		-	mtr:11405813	1076.62