LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca7g01373	ATGGTGCCCATAATCATCCAAATTCTGAGATGGCTGATGCAGCCTTTAGTGTGGAGGTTTATGGGCTTTGGTTCAGCTGTTGTTGGACTAGTTTGTTACGCTCTCAGCTCCTCCTTCAACCATCTATTTGGACAGTGGAATTTGTTTAAAATATTTCTTTACACTGCTTTCAGTTTCATCATCAGTCTCTTGATTTTGTTTGCAAAGATATGGCAGCAGTCCACAAGTCTCCGGTTCAAAGCTCATTGGGCATTTTTGGTTTTGACCATCACCTCAGTCTATTCCTTTTTCTATGATAAAGTAGTTAATGGGAAACCAGATGCATATAGTCTAATTTCCTGTTCTGCGTTTGCTATCATGACACTGAGCTTATCAAGGCAAACACGGTGCGGATTCGAAGTGGATCTTCTCTATTTCTTTCTCGGATGTCTAAACGTACAACTCATGAAGATAAAATTGCCGTTAGCTATTCTTGGAGCAGGCTTCAGCTACTCCCTCATTATTCTCCGTTCTTACTTTTCTTTGATAGATACCGCACTACAAAATGAGTATGTTGGACTCCAAGATGAACGTTCTGTAGTCATTGAAATCCAGTCACCACAACTGCCAATTAGCAGTACTAGTATCGCTAGTGTGATGCAACAGCTCACAATTTGTGTGAAGGCGCTTCAACTCGAAAATTCCAATCTCATCGACATGTTTTTGGAGCAGGCGAAGGAATACTTTGAAGCTAACTCTGAACCAGTAGTAACCGACCATAACTTCATCATCGATGCGTTGCCGCCGGGAAGGATCAACGATCTTCACGAAACGGTTAATTCGATGGTGGGCGCTGGGTTTGAGAAGGAGTGCTCCGAGGTGTATAGCAGCTGGCGGAGAGGATGGCTGGAGGAGTGCCTAATAAATAAGTTATTAGGGTTGCAAAAGGTCAACCTCGAGAATCAACAGGATAGGGAAGCATTTGCCAGTGAAATAATGACTGGAAGATGGATTACGGCTTCCAAGGTCACTCTCAAGATACTATTTCCTGGTGAGCGACGACTCTGCGATCATGTCTTTTTGGGATTCTCCTCTGCCGCAGATCGTTGTTTCACAGAGGTTTGCAGGGGAGCCACGATTCACCTGCTTAATTTTGCTGATGCTGTTGCCAGTGGGAGCCCTTCAGTGAGGCGATTGTTCCAAATGCTCGGCGTGTTTCAGACACTGCATGATCTAATTCCCCAATTCCAATCATTGTTTCCCGATTCGTTGGTGAACGAAGCAATCGCAGTTTATAACAGATTGGGAGAGGCAAGCAGAGACGTTTTCATGGAATTAGACAATCTGATTTTCCGTATCCCGGAGGCCAAGCTAATTGCCCCAGCCGATGGCGGTTATCATCCAATGATGGACAACTTCATCAGTCACCTCATCTCTGCTTGCAGGTCACGGAAGATCCTGGAGCAAATTTTACAAGATTACCCCAAGGATGCCAATGGAGTTGGAACATCTTCTATATTCACAGTGAAGATGAAGAAGATAATGGAATTGTTAGAGAGAAAATTAATAGTGAAGTCCAAAATCTACAATGTTCCTGCTTTGCGCTATATTTTTATGATGAATAATCGGAAGCGCATAGAAATGATGGATAAAATCTGGGAATTTGGAACAATTACTGGCAATGATTGGTTCGGAAAAAACAGGGCAAAAGTCCAACACAATCTTGAACTCTATCAAAGAAGCTCATGGAATAAGCTGCTTGAGTTTATGAAGCTAGATAGCAATGAGTCAGTGGCACCCAACGTTGCAGTAGAGTCAATGAAAGACAAACTCAATTTGTTCAACCTGCACTTTGAAGAGATATGCAGAGTTCAGTCTACATGGTTTATCTTCAATAAGCAGCTAAGGGAAGAAATAATAACATCCGTAGAAAACATATTGTTGCCTGCATATGGAAATTTCATTGGGAGGTTGCACGATGTTCTTGATAGCAATGATTCAGTGGCACCCAACGTTGCAGTAGAGTCAATGAAAGACAAACTCAATTTGTTCAACCTGCACTTTGAAGAGATATGCAGAGTTCAGTCTACATGGTTTATCTTTAATAAGCAGCTAAGGGAAGAAATAATAACATCCGTAGAAAACATATTGTTGCCTGCATATGGAAATTTCATTGGGAGGTTGCACGATGTTCTTGATAGCAATGATTCAGTGGCACCCAACATTGCAGTAGAGTCAATGAAAGACAAACTCAATTTGTTCAACCTGCACTTTGAAGAGATATGCAGAGTTCAGTCTACATGGTTTATCTTTAATAAGCAGCTAAGGGAAGAAATAATAACATCCGTAGAAAACATATTGTTGCCTGCATATGGAAATTTCATTGGGAGGTTGCACGATGTTCTTGATAGCAATGATTCAGTGGCACCCAACGTTGCAGTAGAGTCAATGAAAGACAAACTCAATTTGTTCAACCTGCACTTTGAAGAGATATGCAGAGTTCAGTCTACATGGTTTATCTTTAATAAGCAGCTAAGGGAAGAAATAATAACATCCGTAGAAAACATATTGTTGCCTGCATATGGAAATTTCATTGGGAGGTTGCACGATGTTCTTGATAGCAATGAGTCAGTGGCACCCAACGTTGCAGTAGAGTCAATGAAAGACAAACTCAATTTGTTCAACCTGCACTTTGAAGAGATATGCAGAGTTCAGTCTACATGGTTTATCTTTAATAAGCAGCTAAGGGAAGAAATAATAACATCCGTAGAAAACATATTGTTGCCTGCATATGGAAATTTCATTGGGAGGTTGCACGATGTTCTTGATAGCAATGAGTCAGTGGCACCCAACGTTGCAGTAGAGTCAATGAAAGACAAACTCAATTTGTTCAACCTGCACTTTGAAGAGATATGCAGAGTTCAGTCTACATGGTTTATCTTTAATAAGCAGCTAAGGGAAGAAATAATAACATCCGTAGAAAACATATTGTTGCCTGCATATGGAAATTTCATTGGGAGGTTGCACGATATTCTTGGTGGGCACGCTTATGAGTGTATTGTGTATGGAATGTTTGATATTCAAGATCGACTCAACCATTTATTTTTTGGAAGTAACACAATGAATTAG	3108	0.4086	MVPIIIQILRWLMQPLVWRFMGFGSAVVGLVCYALSSSFNHLFGQWNLFKIFLYTAFSFIISLLILFAKIWQQSTSLRFKAHWAFLVLTITSVYSFFYDKVVNGKPDAYSLISCSAFAIMTLSLSRQTRCGFEVDLLYFFLGCLNVQLMKIKLPLAILGAGFSYSLIILRSYFSLIDTALQNEYVGLQDERSVVIEIQSPQLPISSTSIASVMQQLTICVKALQLENSNLIDMFLEQAKEYFEANSEPVVTDHNFIIDALPPGRINDLHETVNSMVGAGFEKECSEVYSSWRRGWLEECLINKLLGLQKVNLENQQDREAFASEIMTGRWITASKVTLKILFPGERRLCDHVFLGFSSAADRCFTEVCRGATIHLLNFADAVASGSPSVRRLFQMLGVFQTLHDLIPQFQSLFPDSLVNEAIAVYNRLGEASRDVFMELDNLIFRIPEAKLIAPADGGYHPMMDNFISHLISACRSRKILEQILQDYPKDANGVGTSSIFTVKMKKIMELLERKLIVKSKIYNVPALRYIFMMNNRKRIEMMDKIWEFGTITGNDWFGKNRAKVQHNLELYQRSSWNKLLEFMKLDSNESVAPNVAVESMKDKLNLFNLHFEEICRVQSTWFIFNKQLREEIITSVENILLPAYGNFIGRLHDVLDSNDSVAPNVAVESMKDKLNLFNLHFEEICRVQSTWFIFNKQLREEIITSVENILLPAYGNFIGRLHDVLDSNDSVAPNIAVESMKDKLNLFNLHFEEICRVQSTWFIFNKQLREEIITSVENILLPAYGNFIGRLHDVLDSNDSVAPNVAVESMKDKLNLFNLHFEEICRVQSTWFIFNKQLREEIITSVENILLPAYGNFIGRLHDVLDSNESVAPNVAVESMKDKLNLFNLHFEEICRVQSTWFIFNKQLREEIITSVENILLPAYGNFIGRLHDVLDSNESVAPNVAVESMKDKLNLFNLHFEEICRVQSTWFIFNKQLREEIITSVENILLPAYGNFIGRLHDILGGHAYECIVYGMFDIQDRLNHLFFGSNTMN.	1036

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca7g01373	1035	Pfam	Exo70 exocyst complex subunit	805	867	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Seca7g01373	1035	Pfam	Exo70 exocyst complex subunit	329	656	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Seca7g01373	1035	Pfam	Exo70 exocyst complex subunit	736	796	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Seca7g01373	1035	Pfam	Exo70 exocyst complex subunit	875	937	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Seca7g01373	1035	Pfam	Exo70 exocyst complex subunit	665	726	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Seca7g01373	1035	Pfam	Exo70 exocyst complex subunit	945	1023	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Seca7g01373	1035	SUPERFAMILY	Cullin repeat-like	223	657	IPR016159	-
	Seca7g01373	1035	SUPERFAMILY	Cullin repeat-like	738	797	IPR016159	-
	Seca7g01373	1035	SUPERFAMILY	Cullin repeat-like	948	1028	IPR016159	-
	Seca7g01373	1035	Gene3D	Exocyst complex component Exo70	870	938	-	-

Showing 1 to 10 of 18 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca7g01373	Seca-Chr7	23355652	23371949	Dispersed/Tandem

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca7g01373	868	955	EXO70 exocyst subunit family	AT5G58430	38.889	6.47e-15	77.4

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca7g01373	-		-	gmx:100788866	691.034

Showing 1 to 1 of 1 entries