Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca7g01355 | ATGCTGTCAGGAGACATACCTCCCAACCAGACCATTTACATTAAGAATCTCAACGAGAAGGTCAAGAAAGAAGAGTTGAAGAGATCTCTGTATTGCTTATTCTCCCAATATGGAAGGATTTTGGACGTTGTTGCTTTAAAGACAGCCAAGCTTCGAGGACAGGCATGGGTTTGTTTTAGTGAAGTCACTGCTGCCAGCAATGCAGTGCGACAAATGCAGAACTTCCCATTTTATGACAAACCTATGCGAATTCAATATGCAAAATCAAAATCAGATTGTATTGCTAAAGAAGAGGGAAGTTATGTTCCAAGGGAAAAGAAAAAGAAACAAGAGGAGAAAGCTGAAAGAAAGCGGCGTGCTGAAGAAGCTCAGCAATCTTCTATGGCTAATGGAGCACACGGTGCAAGTAATGGTGGCCCAACAGCCTCGTTCCGTCCTGGACCTGGTGCCCAAGAAGCAGCTCCTCCTAACAATATTTTGTTCATAGAGAATTTGCCTTATGAAACAACCGGTAGGATGCTTGAAATGCTCTTCGAACAATACCCAGGTTTTAAGGAAGTGCGTTTGATTGAAGCAAAGCCAGGGATCGCATTCGTAGATTTTGAAGATGAGGTGCAATCATCCATGGCCATGCAGGCTCTTCAAGGCTTCAAAATCACCCCTCAGAATCCCATGATTATAACCTTTGCTAAGAAGTAG | 699 | 0.432 | MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTAKLRGQAWVCFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCIAKEEGSYVPREKKKKQEEKAERKRRAEEAQQSSMANGAHGASNGGPTASFRPGPGAQEAAPPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALQGFKITPQNPMIITFAKK. | 233 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca7g01355 | 232 | CDD | RRM1_U1A_like | 11 | 88 | - | - | |
Seca7g01355 | 232 | Coils | Coil | 104 | 126 | - | - | |
Seca7g01355 | 232 | Gene3D | - | 149 | 232 | IPR012677 | - | |
Seca7g01355 | 232 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 12 | 82 | IPR000504 | GO:0003723 | |
Seca7g01355 | 232 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 160 | 219 | IPR000504 | GO:0003723 | |
Seca7g01355 | 232 | SUPERFAMILY | RNA-binding domain, RBD | 8 | 221 | IPR035979 | GO:0003676 | |
Seca7g01355 | 232 | FunFam | U1 small nuclear ribonucleoprotein A | 4 | 109 | - | - | |
Seca7g01355 | 232 | CDD | RRM2_U1A_like | 156 | 228 | - | - | |
Seca7g01355 | 232 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 10 | 89 | IPR000504 | GO:0003723 | |
Seca7g01355 | 232 | FunFam | U2 small nuclear ribonucleoprotein B'' | 149 | 232 | - | - | |
Seca7g01355 | 232 | Gene3D | - | 4 | 118 | IPR012677 | - | |
Seca7g01355 | 232 | PANTHER | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B | 9 | 90 | - | - | |
Seca7g01355 | 232 | SMART | rrm1_1 | 11 | 85 | IPR000504 | GO:0003723 | |
Seca7g01355 | 232 | SMART | rrm1_1 | 159 | 228 | IPR000504 | GO:0003723 | |
Seca7g01355 | 232 | MobiDBLite | consensus disorder prediction | 98 | 123 | - | - | |
Seca7g01355 | 232 | MobiDBLite | consensus disorder prediction | 98 | 155 | - | - | |
Seca7g01355 | 232 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 158 | 232 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca7g01355 | Seca-Chr7 | 22938879 | 22944009 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca7g01355 | 3 | 232 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 21.610 | 7.93e-09 | 53.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca7g01355 | K11094 | - | gmx:100805822 | 407.527 |