Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01355 ATGCTGTCAGGAGACATACCTCCCAACCAGACCATTTACATTAAGAATCTCAACGAGAAGGTCAAGAAAGAAGAGTTGAAGAGATCTCTGTATTGCTTATTCTCCCAATATGGAAGGATTTTGGACGTTGTTGCTTTAAAGACAGCCAAGCTTCGAGGACAGGCATGGGTTTGTTTTAGTGAAGTCACTGCTGCCAGCAATGCAGTGCGACAAATGCAGAACTTCCCATTTTATGACAAACCTATGCGAATTCAATATGCAAAATCAAAATCAGATTGTATTGCTAAAGAAGAGGGAAGTTATGTTCCAAGGGAAAAGAAAAAGAAACAAGAGGAGAAAGCTGAAAGAAAGCGGCGTGCTGAAGAAGCTCAGCAATCTTCTATGGCTAATGGAGCACACGGTGCAAGTAATGGTGGCCCAACAGCCTCGTTCCGTCCTGGACCTGGTGCCCAAGAAGCAGCTCCTCCTAACAATATTTTGTTCATAGAGAATTTGCCTTATGAAACAACCGGTAGGATGCTTGAAATGCTCTTCGAACAATACCCAGGTTTTAAGGAAGTGCGTTTGATTGAAGCAAAGCCAGGGATCGCATTCGTAGATTTTGAAGATGAGGTGCAATCATCCATGGCCATGCAGGCTCTTCAAGGCTTCAAAATCACCCCTCAGAATCCCATGATTATAACCTTTGCTAAGAAGTAG 699 0.432 MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTAKLRGQAWVCFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCIAKEEGSYVPREKKKKQEEKAERKRRAEEAQQSSMANGAHGASNGGPTASFRPGPGAQEAAPPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALQGFKITPQNPMIITFAKK. 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01355 232 CDD RRM1_U1A_like 11 88 - -
Seca7g01355 232 Coils Coil 104 126 - -
Seca7g01355 232 Gene3D - 149 232 IPR012677 -
Seca7g01355 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 82 IPR000504 GO:0003723
Seca7g01355 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 219 IPR000504 GO:0003723
Seca7g01355 232 SUPERFAMILY RNA-binding domain, RBD 8 221 IPR035979 GO:0003676
Seca7g01355 232 FunFam U1 small nuclear ribonucleoprotein A 4 109 - -
Seca7g01355 232 CDD RRM2_U1A_like 156 228 - -
Seca7g01355 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Seca7g01355 232 FunFam U2 small nuclear ribonucleoprotein B'' 149 232 - -
Seca7g01355 232 Gene3D - 4 118 IPR012677 -
Seca7g01355 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 9 90 - -
Seca7g01355 232 SMART rrm1_1 11 85 IPR000504 GO:0003723
Seca7g01355 232 SMART rrm1_1 159 228 IPR000504 GO:0003723
Seca7g01355 232 MobiDBLite consensus disorder prediction 98 123 - -
Seca7g01355 232 MobiDBLite consensus disorder prediction 98 155 - -
Seca7g01355 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 232 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01355 Seca-Chr7 22938879 22944009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01355 3 232 Eukaryotic Initiation Factors Gene Family AT1G71770 21.610 7.93e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01355 K11094 - gmx:100805822 407.527