Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01302 ATGGAGATAGCTTTGTTTAAGGTGCTCTCTAATGGCATTTCCTCATTTTTACATTTATCATTTTCTGGAAAAATGAACTCAGAACCTGTATCAAAGTATTACCAAAAGGCAGAGAAGGTGCTTAAGGTGTTGAAGCCAATTGTTGATGATGTCACTGTTTCTTCTGATTTAGCTTCTAATGAAGTGCTTACTGAGCTAATCGAGGATCTTGGTCTAGCTGTTGATGAGTTGAGGGAGCTTATTGAGAATTGGCATATATTATCTAGCAAATTTTACTTTGTTATGCAAGTTGAACCATTGATATCAAGAATTCAGGTTTCAGGGCTCAATATTTTACAGCAGCTGAAGGTTTCACAGCAGTGTCTCCCTGATGATTTGGGACCTGAAACATCATCTGCCATTAAAGAAGCTATTGTGGAACAACTGGAAGGTGTAGAACCCAGTCCAGAGGTCCTAGCAAAGATTGCTGAGAACCTGGGCCTCAGGTCTAATCAAGAGGTTCTGATTGAGGCTGTGGCCCTTGAAAGGTTGAAGGAGATTGCTGAACAAACTGAAAAAACTACAGAAGCTGAATATATTGATCAAATGATCTCTGTTATAAATTGTATGCATGAGCACCTTGTTATGCTTAAGCAATCTCAGAGCTCTATCCCAGTGTCAGTTCCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAGTTGATGACAGATCCAGTGATTGTGGCATCAGGGCAAACCTATGAGCGGGCTTTCATCAAGAACTGGATCGATCTGGGGCTTACTGTTTGTCCAAAGACACGTCAGACTCTGGTTCACACCAACCTCATACCTAATTACACTGTAAAGGCATTAATTGCAAGCTGGTGTGAATCAAACAATGTGAAGCTTGTTGATCCCATTAAATCCACAAACTTAAATCAACCATCTCTCCTTCGTGGGTCTACGGAGTCTGGTTCAGCCAAGGAACTGCCTGTTGCAACACCGAATGGTGGAATCCACCAAGAGGGAACATCATCACTGCATCCCCATTCAACTCCAGCAGGTTCCTTGGGTGGCATGGTTAATGGGCAGCATGTGAATCTTGCAAGAATATCACCCACAGGTTCAGATGATGGGTCTTCCAGCTTAGTTGAAGGGAGTATGGATTCAGTTGACCAATCATTAATGTCACCATCCAGAAATGAATCTTCCAATGCCTTGAGCTCAGAACAATCTCAAACCCATATCAGAACTGCTTCTGATTCCACTGCACTCTCTAGTGCAAATTTTCCTCAAGGTACACAAGGTGATAACAACAGTGCTCCTCAACTGTCATCCAATCCCGTCGACAATGAAGATAGTTCTGGGGAATTAAATCAAGGGTCAGATGCTGCTGCCATGCCAACTCCAAATAGAGAACCTGAGTTTTCACCCCAATTGGTGGAGCCAAGGTCTCAAAGCCAAACTGTACTGAGACGGTCATTAGAGAGATTTGTTCCAAGGATAGTGTCATCTCCCTCTGTTGAAACAAGAGCTGATCTTTCTGGTACTGAAACCCATGTTCGGAAATTGGTTGAGGACTTGAAGAGCACTTCTCTTGATACTCAGAGGGAGGCAACAGCTGAACTCCGCCTTCTTGCTAAGCACAACACGGATAACCGAATTGTTATTTCAAATTGTGGAGCCATTGCCTTATTAGTTGATTTGCTTCAATCAACTGATACAACAATCCAGGAAAATTCTGTTACAGCACTTCTTAACTTGTCAATCAATGATAACAACAAAACAGCAATTGCAGATGCTGGTGCAATTGGACCTTTGATTCATGTCCTTAAGACAGGGAGCCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTATCAGTTGTTGAGGGAAACAAGATCAAGATAGGGAGGTCTGGGGCAATTGGACCACTGGTTGATTTATTAGGGAATGGAACCCCTAGGGGCAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGGACCGGATTGTGCAAGCTGGTGCAATCAAGAACCTTGTAGAGTTAATGGATCCCGCCGCCGGAATGGTTGATAAGGCAGTGGCTGTTTTAGCAAATCTTGCCACAATACCAGAAGGAAGAAGAGCAATTGGTCAGGAAGGTGGGATTCCTGTTCTGGTTGAGGTTGTGGAGTTGGGTTCTGCAAGAGGAAAAGAGAATGCTGCAGCGGCTCTTCTACATCTATGCTCAGACAATCACAGATTCTTAAACATAGTGCTGCAAGAAGGAGCTGTGCCCCCATTAGTAGCATTGTCACAATCAGGCACCCCAAGGGCCAAAGAAAAGGTATGGCCCTGGGTCTCCTTAATCAATTTAGAAGCCAAAGACATGGTAGTGCTGGGAGGGCTTGATTTTGAATACCAAATCTCTTGA 2418 0.4338 MEIALFKVLSNGISSFLHLSFSGKMNSEPVSKYYQKAEKVLKVLKPIVDDVTVSSDLASNEVLTELIEDLGLAVDELRELIENWHILSSKFYFVMQVEPLISRIQVSGLNILQQLKVSQQCLPDDLGPETSSAIKEAIVEQLEGVEPSPEVLAKIAENLGLRSNQEVLIEAVALERLKEIAEQTEKTTEAEYIDQMISVINCMHEHLVMLKQSQSSIPVSVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLVHTNLIPNYTVKALIASWCESNNVKLVDPIKSTNLNQPSLLRGSTESGSAKELPVATPNGGIHQEGTSSLHPHSTPAGSLGGMVNGQHVNLARISPTGSDDGSSSLVEGSMDSVDQSLMSPSRNESSNALSSEQSQTHIRTASDSTALSSANFPQGTQGDNNSAPQLSSNPVDNEDSSGELNQGSDAAAMPTPNREPEFSPQLVEPRSQSQTVLRRSLERFVPRIVSSPSVETRADLSGTETHVRKLVEDLKSTSLDTQREATAELRLLAKHNTDNRIVISNCGAIALLVDLLQSTDTTIQENSVTALLNLSINDNNKTAIADAGAIGPLIHVLKTGSPEAKENSAATLFSLSVVEGNKIKIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKDRIVQAGAIKNLVELMDPAAGMVDKAVAVLANLATIPEGRRAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCSDNHRFLNIVLQEGAVPPLVALSQSGTPRAKEKVWPWVSLINLEAKDMVVLGGLDFEYQIS. 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01302 805 SUPERFAMILY RING/U-box 209 298 - -
Seca7g01302 805 MobiDBLite consensus disorder prediction 304 321 - -
Seca7g01302 805 Gene3D - 476 786 IPR011989 -
Seca7g01302 805 FunFam RING-type E3 ubiquitin transferase 220 295 - -
Seca7g01302 805 SUPERFAMILY ARM repeat 512 778 IPR016024 -
Seca7g01302 805 SMART arm_5 624 664 IPR000225 GO:0005515
Seca7g01302 805 SMART arm_5 705 745 IPR000225 GO:0005515
Seca7g01302 805 SMART arm_5 665 704 IPR000225 GO:0005515
Seca7g01302 805 SMART arm_5 542 582 IPR000225 GO:0005515
Seca7g01302 805 SMART arm_5 583 623 IPR000225 GO:0005515
Seca7g01302 805 MobiDBLite consensus disorder prediction 304 480 - -
Seca7g01302 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 295 IPR013083 -
Seca7g01302 805 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 635 677 IPR000225 GO:0005515
Seca7g01302 805 MobiDBLite consensus disorder prediction 359 458 - -
Seca7g01302 805 Pfam U-box domain 221 291 IPR003613 GO:0004842|GO:0016567
Seca7g01302 805 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 553 595 IPR000225 GO:0005515
Seca7g01302 805 Pfam Armadillo/beta-catenin-like repeat 583 622 IPR000225 GO:0005515
Seca7g01302 805 Pfam Armadillo/beta-catenin-like repeat 626 663 IPR000225 GO:0005515
Seca7g01302 805 Pfam Armadillo/beta-catenin-like repeat 542 581 IPR000225 GO:0005515
Seca7g01302 805 Coils Coil 63 83 - -
Seca7g01302 805 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 676 717 IPR000225 GO:0005515
Seca7g01302 805 PANTHER U BOX DOMAIN-CONTAINING 29 778 - -
Seca7g01302 805 FunFam RING-type E3 ubiquitin transferase 496 790 - -
Seca7g01302 805 CDD RING-Ubox_PUB 222 274 IPR045210 -
Seca7g01302 805 MobiDBLite consensus disorder prediction 330 344 - -
Seca7g01302 805 ProSiteProfiles U-box domain profile. 220 294 IPR003613 GO:0004842|GO:0016567
Seca7g01302 805 SMART Ubox_2 224 287 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01302 Seca-Chr7 21118894 21125091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01302 180 785 U-box Gene Family AT2G23140 59.652 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01302 - - gmx:100777715 1122.46