Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01284 ATGGCAACATCTTCTACTTCACTAGTTATTCTCATTTTTCTCTTCTTTGACTTGCACTTGCATGGTGTCATTGCTGATTATGGCGGTTGGCAGAATGGTCATGCCACTTTCTATGGTGGTGGTGATGCTTCTGGCACAATGGGAGGTGCATGTGGTTATGGGAATTTGTATAGTCAAGGATATGGAACTAACACTGCAGCTCTAAGCACTGCTTTGTTCAACAATGGTTTGAGTTGTGGAGCTTGTTTTGAAATGAGGTGTGCTGATGATCCAAGATGGTGCAAGCCTGGCACCATTGTTGTTACTGCCACAAACTTTTGTCCACCAAATTTTGCTTTGCCTAACAATAATGGTGGTTGGTGCAACCCTCCTCTGCAACACTTTGATATGGCAGAACCAGCTTTCTTGCAAATTGCCCAATATAGAGCTGGAATTGTGCCTGTGGCATTTAGAAGGTTAGTGAAATTTGAAATCATCAAATGA 483 0.4244 MATSSTSLVILIFLFFDLHLHGVIADYGGWQNGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEMRCADDPRWCKPGTIVVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVAFRRLVKFEIIK. 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01284 160 SMART dpbb_1 65 150 IPR007112 -
Seca7g01284 160 SUPERFAMILY Barwin-like endoglucanases 29 152 IPR036908 -
Seca7g01284 160 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Seca7g01284 160 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Seca7g01284 160 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Seca7g01284 160 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Seca7g01284 160 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 153 IPR007112 -
Seca7g01284 160 FunFam Expansin 19 155 - -
Seca7g01284 160 CDD DPBB_EXPA_N 29 152 - -
Seca7g01284 160 PANTHER EXPANSIN-A15 6 152 IPR002963 GO:0009664
Seca7g01284 160 Pfam Lytic transglycolase 65 149 IPR009009 -
Seca7g01284 160 Gene3D - 20 154 IPR036908 -
Seca7g01284 160 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Seca7g01284 160 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Seca7g01284 160 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Seca7g01284 160 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Seca7g01284 160 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01284 Seca-Chr7 20694661 20696026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01284 1 153 Expansin Gene Family AT2G40610 75.817 3.29e-82 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01284 - - gmx:100816848 287.73