Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01273 ATGGAAGGTGATGTTTGCATGAATCGTGCGTGCAAGGAGGGCCCTGCCATTCTATGGAAGAAGGGATGGCCCCTGTTATCTGGAGGATTCGCCAGACTCTGTATCAAATGCGGAACTGCTTATGAGAAATCAGTTTTCTGTCATAAATTCCATGCTCATGAAAGTGGTTGGAGGAAATGCAACTATTGCGGCAAGCTTGTCCACTGTGGATGTATAGTATCAAGGTCTTCGTTTGAATACATTGATCTTGGTGGTGTAGGTTGTGTTACCTGTTTAAAGGCTTCCCAAAGTTTTCTGATGCATAATAATGAAGCTCCTAATGAGTCTGTTAGATCAACAAAAAACAATGCAAGTGATCGGGATGCTGAGCATATTGATAGTGCTGGTGAAGGAAAACTTATGCAATTATGTAAAATTGCTGAAGCTAGTGAATCCAAGAGTTGGCCTCAAGCTCAAAAAGATGCCACAGTTTCATGTATTGGTCCAAACAACCAAAAAGCTAAGAGTCTATTCAGGGAAGAGGATACAAGGCTTTCAAATGTGATGAAGCAGTCTAGTCATTCATTTACATTTACTACAGCAGAAAATAATAGACCAACATGGGAGACTAAAAGTATGCAAGAATTGCTTTCACTTAGTGATTCTCCGAGAACCTCATCAGGAAATTGTGCCCTGCCTTCTGCCACAGAAATTGTAGAAGGTAGACTTGAGGTTAAAGAATCTTCTCCCTTTCCTCAAGGGAAAAGTTCTTACCCCCCTATATTGCCTAAACCATTGAAGTCTGGTCATATCATAAATCTTGAAACAAATAAAGACATGAGTTCTCAAGCACGCATTGCCCGGCCACCTGCTGAGGGGAAAGGCAAGAATCAGTTACTTTCTCGATACTGGCCCAGGATTACTGATCAAGAACTGGAGCAATTGTCTGGGGATTTGAAATCTACTGTAGTGCCATTGTTTGAGAAGGTGTTGAGTATCAGTGATGCAAGTCGAATTGGTCGTCTTGTTCTCCCAAAAGCATGCGCTGAGGCTTATTTTCCTCCTATTTCGCAATCAGAAGGTATTCCTCTGCATATCCAAGATGTCAAGGGGAATGAGTGGACATTTCAATTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTAACCCCTTGCATACAGTCCATGCAATTAAATGCTGGTGATACTGTGACATTTAGTCGGATAGATCCTGGGGGGAAATATGTTATGGGTGTTAGAAGAAGGACATCAAATTTTGTATACGCACAGGTTGCCTCTGCATCTGCTCATTCTAATGACATTTCAACAAAGGAAACAACCTTTTCTGGTGCAGCTGAGAATCTGTACTCTGAAAGTAGTTTTGTTGATCTTCTCCAGTCAAGGAAAGGGAGTGAGGAACCTTACTTAGATGGAAATTCAGAACATCTACATTTGGGCACTCAAATTGCTGATGGGCTTCAAACTGAAAATGGTGAGGAGAAGATGAACAATGATACATTGCAGCAACTGATTTCAGTTTCAGAGAAGAAAAGGACTCACAAAATTGGGCCTAAAACTAAGAGGTTGGACATTTATAATGAAGATTCTGCGAATTTGAGACTTGCATGGGATAAAATGGACTTGCTTTGTCCCCCTCCTGGTGTCAAGCCAAGCATTGAAATAATTGATGGTGTAGAAATTGAAGAATATAATGAACCCCCAGTTTTCAGAGAGGAAACCACAGTCAACGTTTCCCCATCTGAGTCTTCAATTCCTGCATCAGAGCAGCCAAGTACAAAGGAATCAGAAAATCTTCAGAGAGCCAACAAAGATTCTAAAAAGGAAAAATTTAAGTCAAACCAACAACAAAAGCCTTCTGGCTTAGATGCTCTTGCTGATGCAGTAATTTTGGAAGATAATCTTGTTGATCCTGTTGGAGTTACCACCAAACATCCAAGGCACCGTCCTGGATGCACTTGTATTGTGTGCGTTCAACCTCCAAGTGGAAAAGCTAGACATAAGCCTTCATGCACTTGCCTTGCATGCTTGTCTATGAAGCGTCGGTTCAACACCCTTAGGTTGCGTAAGAAGAACCACCAATCAAAACATGAAGTAGATGCTGCCCATATTCATCACAGTGATGAACCAGATAGCAAGGGTGCATCTGGAGAAGATACAAGTCAGTTAGAGAAAGAGGGAAGACCAAAAAGAGGACAGGTTGAGGTGGCTGAACCCAGTGCGAGACAAATAGATTTGAATTGTCATCCCAGTCATGAAGATATGCAAGTTGATTAA 2289 0.415 MEGDVCMNRACKEGPAILWKKGWPLLSGGFARLCIKCGTAYEKSVFCHKFHAHESGWRKCNYCGKLVHCGCIVSRSSFEYIDLGGVGCVTCLKASQSFLMHNNEAPNESVRSTKNNASDRDAEHIDSAGEGKLMQLCKIAEASESKSWPQAQKDATVSCIGPNNQKAKSLFREEDTRLSNVMKQSSHSFTFTTAENNRPTWETKSMQELLSLSDSPRTSSGNCALPSATEIVEGRLEVKESSPFPQGKSSYPPILPKPLKSGHIINLETNKDMSSQARIARPPAEGKGKNQLLSRYWPRITDQELEQLSGDLKSTVVPLFEKVLSISDASRIGRLVLPKACAEAYFPPISQSEGIPLHIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLNAGDTVTFSRIDPGGKYVMGVRRRTSNFVYAQVASASAHSNDISTKETTFSGAAENLYSESSFVDLLQSRKGSEEPYLDGNSEHLHLGTQIADGLQTENGEEKMNNDTLQQLISVSEKKRTHKIGPKTKRLDIYNEDSANLRLAWDKMDLLCPPPGVKPSIEIIDGVEIEEYNEPPVFREETTVNVSPSESSIPASEQPSTKESENLQRANKDSKKEKFKSNQQQKPSGLDALADAVILEDNLVDPVGVTTKHPRHRPGCTCIVCVQPPSGKARHKPSCTCLACLSMKRRFNTLRLRKKNHQSKHEVDAAHIHHSDEPDSKGASGEDTSQLEKEGRPKRGQVEVAEPSARQIDLNCHPSHEDMQVD. 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01273 762 CDD B3_DNA 318 419 IPR003340 GO:0003677
Seca7g01273 762 MobiDBLite consensus disorder prediction 694 762 - -
Seca7g01273 762 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 760 - -
Seca7g01273 762 MobiDBLite consensus disorder prediction 579 625 - -
Seca7g01273 762 SMART B3_2 320 421 IPR003340 GO:0003677
Seca7g01273 762 MobiDBLite consensus disorder prediction 602 618 - -
Seca7g01273 762 FunFam B3 domain-containing transcription repressor VAL1 298 424 - -
Seca7g01273 762 MobiDBLite consensus disorder prediction 697 739 - -
Seca7g01273 762 MobiDBLite consensus disorder prediction 579 601 - -
Seca7g01273 762 ProSiteProfiles B3 DNA-binding domain profile. 320 421 IPR003340 GO:0003677
Seca7g01273 762 Gene3D - 298 423 IPR015300 -
Seca7g01273 762 Pfam B3 DNA binding domain 320 420 IPR003340 GO:0003677
Seca7g01273 762 SUPERFAMILY DNA-binding pseudobarrel domain 318 422 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01273 Seca-Chr7 20182502 20188991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01273 1 706 B3 DNA Binding Superfamily AT2G30470 42.726 1.32e-174 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca7g01273 B3 8.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01273 K09287 - gmx:100789848 844.343