Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01272 ATGGACGGTGAAGTTTGCATGAATCATGCGTGCAAAGGTGGCTCTGCTCGTCAATGGAAGATGGGATGGCCCCTGTTATCCGGGGGATTCGCCAGACTCTGCAGCAAATGCGGAACTGCTTATGAGAATTCCGTTTTCTGTCAAAAATTCCACCGTTATGAAAGTGGGTGGAGGAAATGCAACTATTGCGACAAGTTTATCCATTGTGGATGTGTAGTATCAAGGTCTTCGTTTGATTACCTTGATCTTGGTGGTGTAGGTTGTGTTACCTGTTTAAAGGATTCCCAACATTTTCTGATGGATAATAATGAAAATCCTAATGAGTTAGTTAGATCAACAAATAACAATGCAAGTGATCGGGATGTTGAGCATATTGATAGTGCTGGTGAAGGAAAACTGATGCAATTGTGTAAAATTGCTGAAGCTAGTGAATCCAAGGATTGGCCTCAAGCTAAAAGAGATGCCATAGTTTCATGTATTAATCCGAACAATCAAGAAGCTAAATTTCTTTTAAGGGAAAAGGATGTAAGGTTTTCAAATGTGATGAAGCAGTCTAGTAAACCAACAAGGGAAATAAAAAGTATGCGTGATCAATTGCTTTCACTTAGTGCTTCTATGGGAACCCCATCAGGAAATTTTCTCGTACCTTCTGCCACAGAAATTGTAGGAGGTAGACTTGAGGTTAAAGAATCCTCTCCCCTCCCTCAAGGGAAAAGTTCTTACCACCCTATATTGCCTAAACAGTTGAAGTCTGGACTTATCGTGAATCTTGAAACAAATAAAGATAATATTTCTCAAAAATACATTGCCCAACCACCTGTTGAGGAAAGAGGCAAGAATCAATTACTTTCTCGAAACTGGCCCAAGATTACTGATCAAGAGTTAAAGCAATTGTCTATGGATTTGAAATCTATTGTAGTGCCATTGTTTGAGAAGGCTTTTTTTCCTCCTATTTCGCAACCAGAAGGTATTCCTCTGCATATACAAGATGTCAATGGGAAAGAGTGGACATTTCAGTTTAGATTCTGGGCTAATAACAACAGTAGGATGTATGTTTTGGAGGGTCTAACTCCTTGGAAGCAATCCATGCAATTAAACGCTGGTGATACTGTGACATTTAGTCGGAAAGATCCTGGGGGAGAATATGTTATAGGTGTTAGAAGAAAGACATCTAATTTTGTATACACACAGGTTGCCTCTACATCTACTCATTCTAATGACATTTCAACAAAGGAAACAACCTTTTCTGGTATTGTTGAGAATCTACACTCTGAAAGTAGTTTTCCTAATACTTTCTTGTCAAGGAAAGTGAATGGGGAACCTTACTTAAATGGAAATTCAGAACATCTACATTTGGGCACTCCAACTGCTAATTCACTTCTTACTGAAAATTGTGAGGAGATGATGAACAATGATACATCGCAACAACTGATTTCAGTTTTAGAGAAGCTGAGTACTTGCAATATTGGGCCTAAAATTAATAGGATGCACATTGATGGTGAAGATTCTATGAAGTTGAAATTTGAATCAGTTGTAAAGGACATGCTTTGTCCTCCACCTGGTGTCCAGCCAAGCATTGATATAATTGATGGCATAGAAATCGAAGCATATAATGAACCTCCGGTTTTCAAGTAG 1635 0.3872 MDGEVCMNHACKGGSARQWKMGWPLLSGGFARLCSKCGTAYENSVFCQKFHRYESGWRKCNYCDKFIHCGCVVSRSSFDYLDLGGVGCVTCLKDSQHFLMDNNENPNELVRSTNNNASDRDVEHIDSAGEGKLMQLCKIAEASESKDWPQAKRDAIVSCINPNNQEAKFLLREKDVRFSNVMKQSSKPTREIKSMRDQLLSLSASMGTPSGNFLVPSATEIVGGRLEVKESSPLPQGKSSYHPILPKQLKSGLIVNLETNKDNISQKYIAQPPVEERGKNQLLSRNWPKITDQELKQLSMDLKSIVVPLFEKAFFPPISQPEGIPLHIQDVNGKEWTFQFRFWANNNSRMYVLEGLTPWKQSMQLNAGDTVTFSRKDPGGEYVIGVRRKTSNFVYTQVASTSTHSNDISTKETTFSGIVENLHSESSFPNTFLSRKVNGEPYLNGNSEHLHLGTPTANSLLTENCEEMMNNDTSQQLISVLEKLSTCNIGPKINRMHIDGEDSMKLKFESVVKDMLCPPPGVQPSIDIIDGIEIEAYNEPPVFK. 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01272 544 SMART B3_2 291 390 IPR003340 GO:0003677
Seca7g01272 544 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 543 - -
Seca7g01272 544 CDD B3_DNA 302 388 IPR003340 GO:0003677
Seca7g01272 544 ProSiteProfiles B3 DNA-binding domain profile. 326 390 IPR003340 GO:0003677
Seca7g01272 544 Gene3D - 288 392 IPR015300 -
Seca7g01272 544 Pfam B3 DNA binding domain 318 389 IPR003340 GO:0003677
Seca7g01272 544 SUPERFAMILY DNA-binding pseudobarrel domain 310 390 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01272 Seca-Chr7 20155781 20167096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01272 4 543 B3 DNA Binding Superfamily AT4G32010 36.814 1.71e-97 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca7g01272 B3 8e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01272 K09287 - gmx:100799429 564.303