Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca7g01260 | ATGTCCGTACAGTCAACCCTTAAACTGCAAAAGCTGAAGCTGGCTACCCCAAGTTCAGTTTTTGAAGGTGACCCACCATGCAAAACCAAGAGGAAAACCCAAAGGAAGATTGTTCGGATCATTCTCACAGACCATGATGCCACTGATTCTGACTCTTCCAGTGATGAAGAGAGAGAAAACAAACCAAAAAGAACACGAAGAACAAAGAGGGAAATCACACTGATAAACATGAACTTTCACTCCTCAGATTCTCCTTCATCATCTTCTTATTCTTCTCCATCTTCTTCTTCTCTCACTTGCTCCTTCTCTTCTTCCTCGGAGCGTGAGAGCCTCACCAAGTGCAACAAGAGACCCAAAAAGCAACCGCCGTCCACCGCCACGCGCCGCCACAACAAGTTCCGCGGCGTCCGGCAGCGACCTTGGGGCAGGTGGGCCGCCGAGATCCGTGATCCCACCCGCCGGAAAAGGCTCTGGCTGGGAACCTTCGACACGGCGGAGGAGGCCGCCACCGAGTACGACAAGGCGGCGGTGAAGCTGAAGGGTCCAAACGCCGTCACTAACTTCCCCAAGACGCCGGCAGAGGAGGAAACGGCGGTTGTGCCGCCTTCAGTCTCCGTTGACGGCGGCGCGTCGTACTCCGACGCTTTGGCCTCGCCGACGTCTGTTTTGGCGTACGTGGACGGTGACTCGACGCCGTTTGACGGTTTCCGTTACGGCGACGTGGACGCGTTTGGGTTCCACATCGACGGGCCGTTAAGTTTGCCGGACATGGACGTTATGCTGACGTGTCAACAAAAGAAGGAAGATGAGGCGTTCGATGAATTCGACCTCGACGAGTTCATAACGTGGCCTTACTAA | 858 | 0.5443 | MSVQSTLKLQKLKLATPSSVFEGDPPCKTKRKTQRKIVRIILTDHDATDSDSSSDEERENKPKRTRRTKREITLINMNFHSSDSPSSSSYSSPSSSSLTCSFSSSSERESLTKCNKRPKKQPPSTATRRHNKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAATEYDKAAVKLKGPNAVTNFPKTPAEEETAVVPPSVSVDGGASYSDALASPTSVLAYVDGDSTPFDGFRYGDVDAFGFHIDGPLSLPDMDVMLTCQQKKEDEAFDEFDLDEFITWPY. | 286 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca7g01260 | 285 | SMART | rav1_2 | 132 | 195 | IPR001471 | GO:0003700|GO:0006355 | |
Seca7g01260 | 285 | MobiDBLite | consensus disorder prediction | 25 | 73 | - | - | |
Seca7g01260 | 285 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 35 | 224 | - | - | |
Seca7g01260 | 285 | CDD | AP2 | 132 | 189 | IPR001471 | GO:0003700|GO:0006355 | |
Seca7g01260 | 285 | PIRSF | PTI6 | 7 | 285 | IPR017392 | GO:0003700 | |
Seca7g01260 | 285 | MobiDBLite | consensus disorder prediction | 18 | 135 | - | - | |
Seca7g01260 | 285 | FunFam | Ethylene-responsive transcription factor 2 | 131 | 190 | - | - | |
Seca7g01260 | 285 | PRINTS | Ethylene responsive element binding protein signature | 155 | 171 | IPR001471 | GO:0003700|GO:0006355 | |
Seca7g01260 | 285 | PRINTS | Ethylene responsive element binding protein signature | 133 | 144 | IPR001471 | GO:0003700|GO:0006355 | |
Seca7g01260 | 285 | SUPERFAMILY | DNA-binding domain | 132 | 189 | IPR016177 | GO:0003677 | |
Seca7g01260 | 285 | ProSiteProfiles | AP2/ERF domain profile. | 132 | 189 | IPR001471 | GO:0003700|GO:0006355 | |
Seca7g01260 | 285 | Pfam | AP2 domain | 132 | 181 | IPR001471 | GO:0003700|GO:0006355 | |
Seca7g01260 | 285 | MobiDBLite | consensus disorder prediction | 74 | 109 | - | - | |
Seca7g01260 | 285 | Gene3D | AP2/ERF domain | 131 | 190 | IPR036955 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca7g01260 | Seca-Chr7 | 19586723 | 19587580 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca7g01260 | 28 | 225 | AP2-EREBP Transcription Factor Family | AT4G27950 | 45.098 | 1.35e-40 | 142 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Seca7g01260 | AP2 | 2.6e-14 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca7g01260 | K13434 | - | gmx:100800489 | 326.635 |