Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01260 ATGTCCGTACAGTCAACCCTTAAACTGCAAAAGCTGAAGCTGGCTACCCCAAGTTCAGTTTTTGAAGGTGACCCACCATGCAAAACCAAGAGGAAAACCCAAAGGAAGATTGTTCGGATCATTCTCACAGACCATGATGCCACTGATTCTGACTCTTCCAGTGATGAAGAGAGAGAAAACAAACCAAAAAGAACACGAAGAACAAAGAGGGAAATCACACTGATAAACATGAACTTTCACTCCTCAGATTCTCCTTCATCATCTTCTTATTCTTCTCCATCTTCTTCTTCTCTCACTTGCTCCTTCTCTTCTTCCTCGGAGCGTGAGAGCCTCACCAAGTGCAACAAGAGACCCAAAAAGCAACCGCCGTCCACCGCCACGCGCCGCCACAACAAGTTCCGCGGCGTCCGGCAGCGACCTTGGGGCAGGTGGGCCGCCGAGATCCGTGATCCCACCCGCCGGAAAAGGCTCTGGCTGGGAACCTTCGACACGGCGGAGGAGGCCGCCACCGAGTACGACAAGGCGGCGGTGAAGCTGAAGGGTCCAAACGCCGTCACTAACTTCCCCAAGACGCCGGCAGAGGAGGAAACGGCGGTTGTGCCGCCTTCAGTCTCCGTTGACGGCGGCGCGTCGTACTCCGACGCTTTGGCCTCGCCGACGTCTGTTTTGGCGTACGTGGACGGTGACTCGACGCCGTTTGACGGTTTCCGTTACGGCGACGTGGACGCGTTTGGGTTCCACATCGACGGGCCGTTAAGTTTGCCGGACATGGACGTTATGCTGACGTGTCAACAAAAGAAGGAAGATGAGGCGTTCGATGAATTCGACCTCGACGAGTTCATAACGTGGCCTTACTAA 858 0.5443 MSVQSTLKLQKLKLATPSSVFEGDPPCKTKRKTQRKIVRIILTDHDATDSDSSSDEERENKPKRTRRTKREITLINMNFHSSDSPSSSSYSSPSSSSLTCSFSSSSERESLTKCNKRPKKQPPSTATRRHNKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAATEYDKAAVKLKGPNAVTNFPKTPAEEETAVVPPSVSVDGGASYSDALASPTSVLAYVDGDSTPFDGFRYGDVDAFGFHIDGPLSLPDMDVMLTCQQKKEDEAFDEFDLDEFITWPY. 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01260 285 SMART rav1_2 132 195 IPR001471 GO:0003700|GO:0006355
Seca7g01260 285 MobiDBLite consensus disorder prediction 25 73 - -
Seca7g01260 285 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 35 224 - -
Seca7g01260 285 CDD AP2 132 189 IPR001471 GO:0003700|GO:0006355
Seca7g01260 285 PIRSF PTI6 7 285 IPR017392 GO:0003700
Seca7g01260 285 MobiDBLite consensus disorder prediction 18 135 - -
Seca7g01260 285 FunFam Ethylene-responsive transcription factor 2 131 190 - -
Seca7g01260 285 PRINTS Ethylene responsive element binding protein signature 155 171 IPR001471 GO:0003700|GO:0006355
Seca7g01260 285 PRINTS Ethylene responsive element binding protein signature 133 144 IPR001471 GO:0003700|GO:0006355
Seca7g01260 285 SUPERFAMILY DNA-binding domain 132 189 IPR016177 GO:0003677
Seca7g01260 285 ProSiteProfiles AP2/ERF domain profile. 132 189 IPR001471 GO:0003700|GO:0006355
Seca7g01260 285 Pfam AP2 domain 132 181 IPR001471 GO:0003700|GO:0006355
Seca7g01260 285 MobiDBLite consensus disorder prediction 74 109 - -
Seca7g01260 285 Gene3D AP2/ERF domain 131 190 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01260 Seca-Chr7 19586723 19587580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01260 28 225 AP2-EREBP Transcription Factor Family AT4G27950 45.098 1.35e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g01260 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01260 K13434 - gmx:100800489 326.635