Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01257 ATGGCAGAGGTAGCTTTGAATTCAATTGTCAATATCTTACACTTTGCAGCAAAAAGACTCTCCATGAAGCTCTACTCCCCTCCAATGCACAATTTCCTTTTTATCATTGTTATTCTTTCTCCTCTGGTTATTGCTGACCTAAATTCTGATAAGCAAGCCCTTCTTGATTTTTCTGCTGCTGTCCCCCATGGTCGGAACCTTAAGTGGGATCGAGCTACCTCAATCTGTACATCTTGGGTAGGCATCACTTGCAATTCAAATGGCACTCGTGTTGTTTCTGTCCGGCTCCCTGGAGTTGGACTAGTGGGCACCATCCCAGCCAATACACTCAGCAAACTTGATTCACTCAAAACTATCAGCCTGCGTTCCAACCTACTCAGTGGAAGTCTACCTCCTGATATTACTTCTCTTCCTTCTCTACAATATCTCTACCTTCAGCATAATAACCTTTCTGGTGATATACCTACCTCATTGTCAGCCCAACTCAATGCACTTGTTTTGTCATACAACTCCTTCACTGGTAGCATTCCTAAGACATTACAAAACTTAACACAACTAACTAGATTGAGCCTTGAGAACAACTCCCTATCGGGACCGATACCTGATCTCAATGTCACTAAGCTTAAGCATTTGAATTTAAGCTACAACCATTTGAATGGTTCTGTCCCTGAAGCTCTTCAGATTTTTCCAAATTCTTCCTTTGAAGGGAACCCTCTCTTATGTGGATTACCTCTAAAATCATGCTCTGGAGTCCCTCCTACATCTCCTCCTGCTTTGACTCCAGCCCCATCATCAACTCCTGCAAGACAAAGCTCCAAAAATAAACTGAGTAAGGTAGCTATCATTGCAATTGCTGTTGGTGGAGCTGTGCTGTTGTTTTTTGTAGTTCTTGTCATTGTTCTTTGCGGTTTAAAGAAAAAAGATGATGGAAGCCCCACTTCCAGAGCAAATAAAGGGAAGGGTCCTAGTGGTGGGAGGAGTGAAAAGCCAAAAGAAGAGTTTGGAAGTGGGGTGCAAGAACCTGAGAAAAACAAGTTGGTTTTCTTTGAGGGATGCTCTTATAATTTTGACCTTGAGGATTTGCTGAGGGCTTCAGCTGAGGTTTTAGGAAAGGGCAGTTATGGTACTGCATATAAGGCTATCTTGGAGGAGTCAACAACAGTTGTAGTGAAAAGGTTGAAAGAAGTTGTGGTAGGCAAGAGGGAATTTGAACAGCAGATGGAAATTGTGGGAAGGATGGGACAGCACCCAAATGTTGTGCCACTTCGTGCTTATTATTATTCAAAGGATGAGAAGCTTTTGGTTTGCGACTATGTGCCAAATGGCAATCTATCTACCCTCTTGCATGGTAGTAGGACAGGTGGAAGAACTCCATTAGATTGGAACTCTCGAATAAAAATCTCTCTTGGAATTGCCAGAGGAATTGCTCACATACATTCAGTTGGTGGTCCAAAATTCACACATGGAAATGTTAAATCCTCCAATGTCCTCCTCAGCCAAGATAATGATGGCTGCATTTCTGACTTTGGCCTAACCCCACTTATGAATGTTCCTGCAACCCCTTCTAGAGCCGCAGGTTATCGTGCTCCTGAGGTGATTGAAACCCGGAAGCACACTCATAAATCAGATGTATACAGTTTTGGTGTCCTCCTTTTGGAAATGCTTACAGGGAAAGCACCACAACAGTCTCCGGGACGCGATGACATGGTTGATCTCCCTAGGTGGGTTCAGTCTGTTGTTAGGGAGGAGTGGACAGCTGAGGTTTTTGATGTGGAGCTAATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGCCATGGCCTGTGTGGCAAAGGTTCCTGATATGAGACCTACCATGGAAGAAGTGGTGAGAATGATAGAAGAAATCCGGCAATCTGACTCAGAAAACCGACCATCTTCTGAAGAGAATAAATCAAAGGACTCAACTGTTCAAACTCCATAA 1977 0.4325 MAEVALNSIVNILHFAAKRLSMKLYSPPMHNFLFIIVILSPLVIADLNSDKQALLDFSAAVPHGRNLKWDRATSICTSWVGITCNSNGTRVVSVRLPGVGLVGTIPANTLSKLDSLKTISLRSNLLSGSLPPDITSLPSLQYLYLQHNNLSGDIPTSLSAQLNALVLSYNSFTGSIPKTLQNLTQLTRLSLENNSLSGPIPDLNVTKLKHLNLSYNHLNGSVPEALQIFPNSSFEGNPLLCGLPLKSCSGVPPTSPPALTPAPSSTPARQSSKNKLSKVAIIAIAVGGAVLLFFVVLVIVLCGLKKKDDGSPTSRANKGKGPSGGRSEKPKEEFGSGVQEPEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESTTVVVKRLKEVVVGKREFEQQMEIVGRMGQHPNVVPLRAYYYSKDEKLLVCDYVPNGNLSTLLHGSRTGGRTPLDWNSRIKISLGIARGIAHIHSVGGPKFTHGNVKSSNVLLSQDNDGCISDFGLTPLMNVPATPSRAAGYRAPEVIETRKHTHKSDVYSFGVLLLEMLTGKAPQQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKVPDMRPTMEEVVRMIEEIRQSDSENRPSSEENKSKDSTVQTP. 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01257 658 Pfam Protein kinase domain 366 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g01257 658 Gene3D Phosphorylase Kinase; domain 1 331 438 - -
Seca7g01257 658 SUPERFAMILY Protein kinase-like (PK-like) 367 641 IPR011009 -
Seca7g01257 658 Gene3D Ribonuclease Inhibitor 205 249 IPR032675 -
Seca7g01257 658 MobiDBLite consensus disorder prediction 308 339 - -
Seca7g01257 658 MobiDBLite consensus disorder prediction 322 339 - -
Seca7g01257 658 Gene3D Ribonuclease Inhibitor 47 204 IPR032675 -
Seca7g01257 658 PANTHER OS05G0588300 PROTEIN 33 646 - -
Seca7g01257 658 ProSiteProfiles Protein kinase domain profile. 363 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g01257 658 FunFam Leucine-rich repeat receptor-like protein kinase 49 159 - -
Seca7g01257 658 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 439 646 - -
Seca7g01257 658 SUPERFAMILY L domain-like 60 247 - -
Seca7g01257 658 Pfam Leucine Rich Repeat 207 229 IPR001611 GO:0005515
Seca7g01257 658 MobiDBLite consensus disorder prediction 633 658 - -
Seca7g01257 658 FunFam Leucine-rich repeat receptor-like protein kinase 160 248 - -
Seca7g01257 658 ProSitePatterns Protein kinases ATP-binding region signature. 369 400 IPR017441 GO:0005524
Seca7g01257 658 FunFam pollen receptor-like kinase 1 331 438 - -
Seca7g01257 658 Pfam Leucine rich repeat 104 150 IPR001611 GO:0005515
Seca7g01257 658 MobiDBLite consensus disorder prediction 633 649 - -
Seca7g01257 658 Pfam Leucine rich repeat N-terminal domain 48 85 IPR013210 -
Seca7g01257 658 Gene3D Transferase(Phosphotransferase) domain 1 439 657 - -
Seca7g01257 658 CDD STKc_IRAK 369 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01257 Seca-Chr7 19547171 19552137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01257 19 656 Receptor kinase-like Gene Family AT5G58300 68.062 0.0 874
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca7g01257 Pkinase 3.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01257 - - gmx:100818344 1073.92