Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01234 ATGGGGTTGCTTTTGAAAAGGGGGAAGAAAAACACCCTGTTTAGTTCTGAAGAGATATTTAAGAGGTCTGGTTATTTGTGTGTTCCTGGGATGTATCTTTCAAAGGGTTGTAAGTGTGAAGTTGTTCTCTGCTTTTTGTTATGCTGCTATTTCCTGTTGGCTTCTGGACAGAGTACTGACCCCAATGAAGTTGACGCATTGAGAGCCATAAGGGAGAAATTGAATGACGTTAATGGAAATTTGAGCAGCTGGAGTCGTGGAGACCCATGTACATCCCAGTGGACAGGAGTATTGTGCTCCAATAGAACATCGACCGATGGCAATCTACATGTTCTGCAATTGCAATTACTGAATATGAACTTGTCTGGAACTTTGGCACCTGACATTGGCCGCTTATCTCATCTGCAAATATTGAGCTTTATGTGGAACAACATAAGTGGGAGTATACCGAGTGAAATTGGCAACATCAAAACTTTAAAACTCTTGCTCCTGAATGGGAATAATTTAACTGGCACGTTACCAGAAGAGCTTGGCTATCTTCCAGTCCTCAAAAGAATACAAATCGATTACAACAATATTACAGGACCTATTCCTCAATCATTTGCAAATCTAAACAGCACACAACACTTTCACATGAACAACAATTCACTTACTGGCCAAATCCCACCAGAGCTTTATCGCTTAGGAAGCCTTTTTCACCTTCTGCTTGACAACAATAAATTAACAGGATATCTCCCCTCCAACCTCTCTGAGATGCCAAGCTTAAAGATTCTTCAACTTGATAACAATAACTTTGGTGGAAGTAGCATTCCAGATTCTTATGCCAACATGTCAAAATTATTGAAATTGAGCCTTAGGAACTGCAACTTGACAGGACCAATTCCTGATTTAAGCAGGATACCACACCTTAGTTATCTTGACATCAGTTTCAATCAGTTGAATGGATCAATTCCTGCTAATAAGCTTTCTGAAAATATCACAACTGTTGATTTATCAAGCAACAAGCTGACTGGAACTATTCCATCCTACTTTTCTGGTCTTCCTCATCTTCAGAAATTGTCAATTTCAAACAATTTATTGAGTGGCAATGTTTCTTCTACCATTTGGCAGGACAGGACTTTAAATGCAACAGAAATGCTTCTCTTGAACATGCAAAACAATCAACTTACAAGCATATCAGGAAGTACAAATCTTCCTCCAAATGTCACACTCTTGCTTAGAGGAAATCCTTTATGCACAAATAACAACACTCTAGCTCAGTTTTGTGGAGCTGGAAGTGACAATAACATCGATGGCAACTTCAATGGCACCTGTCCTAGTCAACCATGTCCCCCTCCTTATGAATACAATGCGCAGTGTGTCTGTGTAGCCCCTTTGTTTGTTCAATACCGGTTGAAAAGTCCAGGATTTTCAGATTTCCGTACATATGTGGAACCATTTGAGAGCTTCCTAACAGATGGTCTTAATATACATAATAATCAGCTACACATTAATAGTTTTACATGGGAAGAAGGGCCTCGGTTGAAAATGGACTTGAAGCTGTTTCCTGTATATATTGATAATGGAAGCTCTCATCTTTTCAATACAAGTGAGGTTCATCGGATCAGAAACAAGTTCAGAGAATGGGATATGAACGACAATGACTTGTTTGGACCTTATGAACTTCTAGATTTCATTATCCTGGATCCTTACAATGATGCAGCGACTGATAAATCTTCAAGTTCAGGGATAAGCAAAGGTGCACTAGCTGGAATAGTCTTAGGTGTAATTGCTGGTTCAGTTACATTATCTGCAATTGTTACTCTTCTTATATTAAGATTACGCTTCAAAGATTACCATACACTTTCCAAACGACTTAAAGCATCTAGGATCTCAATAAAAATTGATGGTGTAAGATCATTTGATTATGAAGAAATGGCTTTGGCTACGAACAATTTTAGTGAATCTGCTCAAATTGGACAAGGGGGATATGGGAAGGTTTATAAAGGCACTCTTTCTGATGGAACTGTTGTTGCCATAAAACGTGCACAAGAGGGTTCACTGCAAGGTGAGAGGGAGTTTCTTACAGAAATACAATTGCTATCAAGGTTACATCATCGCAACCTTGTATCTTTGATTGGATACTGTGATGAAGAGGGTGAACAGATGCTGGTTTATGAATATATGCCAAACAGAACGCTAAGGGATCACCTTTCTGCTTCTTCAAAGGAACCTCTTAGCTTTTCCATGAGATTGAAGATTGCTCTAGGGTCAGCTAAAGGTCTTCTGTATCTACACACAGAAGCTGATCCTCCAATTTTCCATAGAGATGTTAAGGCCAGTAATATATTATTGGACTCTAAGTTCACAGCAAAAGTTGCTGATTTTGGACTTTCAAGACTTGCCCCAGTTCCAGATGTTGAAGGCAATCTTCCTGGTCATGTATCTACAGTGGTAAAGGGGACCCCGGGTTACCTTGATCCAGAGTATTTCTTAACCCACAAGTTGACCGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTTTGGAACTTGTGACTGGAAGGCCACCAATCTTCCATGGAGAAAATATTATTAGACAGGTTAATGTGGCTTACCAATCTGGTGGAATATTGTCTGCTGTTGATAAACGTTTGGGATCTTTTCCTTCTGAGTCTTTGGAGAAATTTTTGATTTTGGCTTTGAAGTGTTGCAAAGATGCACCAGATGAACGGCCTAAAATGGCAGAAGTTGTTAGAGAGCTTGAAAACATTTTGTCTATGATGCCTGAGTTTGATGCCATTACCAAGGGTGTTGAATATCCTACAAGTGATTCTGGATCAGTATTTAGTTCACAGCCTTCATCATCTACTATAAAGACTCCATTTATTTCATTAGATGTGTCAGGTAGTGACCTTGTTAGTGGAGATATACCAACCATTAGACCAAGATAG 2934 0.3923 MGLLLKRGKKNTLFSSEEIFKRSGYLCVPGMYLSKGCKCEVVLCFLLCCYFLLASGQSTDPNEVDALRAIREKLNDVNGNLSSWSRGDPCTSQWTGVLCSNRTSTDGNLHVLQLQLLNMNLSGTLAPDIGRLSHLQILSFMWNNISGSIPSEIGNIKTLKLLLLNGNNLTGTLPEELGYLPVLKRIQIDYNNITGPIPQSFANLNSTQHFHMNNNSLTGQIPPELYRLGSLFHLLLDNNKLTGYLPSNLSEMPSLKILQLDNNNFGGSSIPDSYANMSKLLKLSLRNCNLTGPIPDLSRIPHLSYLDISFNQLNGSIPANKLSENITTVDLSSNKLTGTIPSYFSGLPHLQKLSISNNLLSGNVSSTIWQDRTLNATEMLLLNMQNNQLTSISGSTNLPPNVTLLLRGNPLCTNNNTLAQFCGAGSDNNIDGNFNGTCPSQPCPPPYEYNAQCVCVAPLFVQYRLKSPGFSDFRTYVEPFESFLTDGLNIHNNQLHINSFTWEEGPRLKMDLKLFPVYIDNGSSHLFNTSEVHRIRNKFREWDMNDNDLFGPYELLDFIILDPYNDAATDKSSSSGISKGALAGIVLGVIAGSVTLSAIVTLLILRLRFKDYHTLSKRLKASRISIKIDGVRSFDYEEMALATNNFSESAQIGQGGYGKVYKGTLSDGTVVAIKRAQEGSLQGEREFLTEIQLLSRLHHRNLVSLIGYCDEEGEQMLVYEYMPNRTLRDHLSASSKEPLSFSMRLKIALGSAKGLLYLHTEADPPIFHRDVKASNILLDSKFTAKVADFGLSRLAPVPDVEGNLPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELVTGRPPIFHGENIIRQVNVAYQSGGILSAVDKRLGSFPSESLEKFLILALKCCKDAPDERPKMAEVVRELENILSMMPEFDAITKGVEYPTSDSGSVFSSQPSSSTIKTPFISLDVSGSDLVSGDIPTIRPR. 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01234 977 ProSitePatterns Protein kinases ATP-binding region signature. 652 674 IPR017441 GO:0005524
Seca7g01234 977 CDD STKc_IRAK 652 918 - -
Seca7g01234 977 ProSiteProfiles Protein kinase domain profile. 646 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g01234 977 SUPERFAMILY L domain-like 70 421 - -
Seca7g01234 977 Gene3D Transferase(Phosphotransferase) domain 1 722 930 - -
Seca7g01234 977 Pfam Leucine rich repeat N-terminal domain 61 100 IPR013210 -
Seca7g01234 977 SMART serkin_6 646 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g01234 977 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 61 222 - -
Seca7g01234 977 SUPERFAMILY Protein kinase-like (PK-like) 631 929 IPR011009 -
Seca7g01234 977 FunFam Leucine-rich repeat protein kinase family protein 610 721 - -
Seca7g01234 977 Gene3D Phosphorylase Kinase; domain 1 617 721 - -
Seca7g01234 977 Gene3D Ribonuclease Inhibitor 222 319 IPR032675 -
Seca7g01234 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 766 778 IPR008271 GO:0004672|GO:0006468
Seca7g01234 977 Gene3D Ribonuclease Inhibitor 320 431 IPR032675 -
Seca7g01234 977 Pfam Protein kinase domain 647 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g01234 977 PANTHER RECEPTOR-LIKE PROTEIN 55 71 919 - -
Seca7g01234 977 Pfam Leucine rich repeat 325 362 IPR001611 GO:0005515
Seca7g01234 977 Pfam Leucine rich repeat 182 241 IPR001611 GO:0005515
Seca7g01234 977 Gene3D Ribonuclease Inhibitor 60 221 IPR032675 -
Seca7g01234 977 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 722 931 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01234 Seca-Chr7 18768347 18778799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01234 48 924 Receptor kinase-like Gene Family AT5G01950 56.966 0.0 968
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Seca7g01234 Pkinase 6.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01234 - - gmx:100801035 1413.28