Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01233 ATGGCAAAGGGTTGCTCCAGCAACAACTATGAAGAGGCTAGGAAACAAAGACTTGAAGAAAACAAGAAGAGGTTTGAGGATTTGGGAATTTCAAAGATTTCAAAAAATTTGACTGAAATAGCAAGTCCTGCCAAAAAGAAGACCCCGCATCTTCCTAAACTGAAACCAAAGACTAACAGTGTAGTGGAACCTAGGCGCTCTTCTCGGGCACGAAACCCAGTTCCTTCATACCGTGAAGAGGTTAGCATGGACTTTCAAACTTCGCGGAAGAGGTCAAGGTCACATTCATCATCATGGCAAAGGACTCTCAGTTATGTTGCAAGGCCACTAGATGAAATCAAAGAAGCTACAGAAGAAGAAAGAAATCGTGCTCTAGAGGCTGCCAAGGCCCTCCAAAACAACTTGCTGTCTTCGAATCCATCATTTACCAAGTCCATGGTTCGGTCTCATGTTTATAGCTGTTTTTGGTTGGGTCTCCCTTCTAAGTTTTGTGAGGAATATCTTCCAAAAACTGTGTATAACATGATTTTAGAGGATGAAAATGGCTCCGAATATGAGGCTGTTTACATTGGCCAAAGAAGTGGGCTTAGTGGTGGCTGGAGAGCATTTGCATTGGAACATAAGTTGGATGATGGTGATGCACTTATTTTTCAATTGGTGGAAGCAGCACGATTTAAGATTTATATTGTTAAAGCATTTCCAGATTCAGTTGAAGAAGTTGGAAAGGATACTTTGAAGGAAGAAGGAAATATGCGTGCCACAAAAGCAACAAAAGCGCAGAAAACTGCCAGTAATCCTGAATCAGGATCAAACAAGGCAAAAACGAAAAAACAGGCCATTGTAAATGAAACTAAGGTATCAGAAAGTTTTCAGGAACATCTGCCAGAAAGTAGCATTGGCAATGGAGTCAAACCACAGAAGGTAAATCCGACTAAGAAAACTAAGTCTTCCCGGAAAATGGAAAAGAAATCTAAAGTGCCTGCTACTGCTGAATCAAAAGGGGAAGCACAAATTGAATCTGTGAAACCAAAGACAGCTATTAAGCTGTCAAACAAGACAAGGAAGTCAAAAGAAGGTTCTGTACATGAAATTGGTGACTCGGGCAACAGTGAGCAGCCTCTTGCAGAAAATAATACTGTCAAACCAAGAGGGGTTAACCGGGGCAAGAAGAAAGAATCTGTTCAGATTCAGAATGATGATAGTGAGATAAAGAAAGTTGAAACAGTTGAGGTAAAGAAAGTTGACTCGGGCAACACTGAGCAGCCTCTTTCAGAAAATAATACTGTCAAACCAAGAGGGGCTAACCGGGGCAAGAAGAAAGAATCTGTTCAGAATGCTGATAGTGGGATAAAGAAAGTTGAACCAGTTGGAGGAGCAAGCAAATCTGTTTCACAAACACCTAGAAAAAAACCAGCTCCAAAGTTTTTCAGAAAGAAAGCTTAG 1443 0.4096 MAKGCSSNNYEEARKQRLEENKKRFEDLGISKISKNLTEIASPAKKKTPHLPKLKPKTNSVVEPRRSSRARNPVPSYREEVSMDFQTSRKRSRSHSSSWQRTLSYVARPLDEIKEATEEERNRALEAAKALQNNLLSSNPSFTKSMVRSHVYSCFWLGLPSKFCEEYLPKTVYNMILEDENGSEYEAVYIGQRSGLSGGWRAFALEHKLDDGDALIFQLVEAARFKIYIVKAFPDSVEEVGKDTLKEEGNMRATKATKAQKTASNPESGSNKAKTKKQAIVNETKVSESFQEHLPESSIGNGVKPQKVNPTKKTKSSRKMEKKSKVPATAESKGEAQIESVKPKTAIKLSNKTRKSKEGSVHEIGDSGNSEQPLAENNTVKPRGVNRGKKKESVQIQNDDSEIKKVETVEVKKVDSGNTEQPLSENNTVKPRGANRGKKKESVQNADSGIKKVEPVGGASKSVSQTPRKKPAPKFFRKKA. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01233 480 ProSiteProfiles B3 DNA-binding domain profile. 142 233 IPR003340 GO:0003677
Seca7g01233 480 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 54 232 IPR044837 -
Seca7g01233 480 SMART B3_2 142 233 IPR003340 GO:0003677
Seca7g01233 480 MobiDBLite consensus disorder prediction 415 431 - -
Seca7g01233 480 MobiDBLite consensus disorder prediction 383 414 - -
Seca7g01233 480 Gene3D - 116 233 IPR015300 -
Seca7g01233 480 Coils Coil 8 28 - -
Seca7g01233 480 MobiDBLite consensus disorder prediction 36 98 - -
Seca7g01233 480 CDD B3_DNA 140 231 IPR003340 GO:0003677
Seca7g01233 480 MobiDBLite consensus disorder prediction 255 310 - -
Seca7g01233 480 MobiDBLite consensus disorder prediction 365 379 - -
Seca7g01233 480 SUPERFAMILY DNA-binding pseudobarrel domain 137 230 IPR015300 -
Seca7g01233 480 MobiDBLite consensus disorder prediction 432 447 - -
Seca7g01233 480 Coils Coil 114 134 - -
Seca7g01233 480 MobiDBLite consensus disorder prediction 244 480 - -
Seca7g01233 480 Pfam B3 DNA binding domain 142 228 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01233 Seca-Chr7 18757769 18766511 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01233 10 232 B3 DNA Binding Superfamily AT5G58280 50.593 9.34e-71 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca7g01233 B3 1.7e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01233 - - gmx:100786265 475.707