Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01232 ATGGCAAAGGGTTGCTCCAGCAACAACTATGAAGAGGCTAGGAAACAAAGACTTGAAGAAAACAAGAAGAGGTTTGAGGATTTGGGAATTTCAAAGATTTCAAAAAAATTGACTGAAATAGCAAGTCCTGCCAAAAAGAAGACCCCGCATCTTCCTAAACTGAAACCAAAGACTAACAGTGTAGTGGAACCTAGGCGCTCTTCTCGTGTACGAAACCCAGTTCCTTCATACCGTGAAGAGGTTAGCATGGACTTTCAAACTTCGCGGAAGAGGTCAAGGTCACATTCATCATCATGGGGAAGTTATGTTGCAAGGCCACTAGATGAAATCAAAGAAGCTACAAATGAAGAAAGAAGTCGTGCTCTAGAGGCTGCTGAGGCCCTCCAAAACAACTTGCAGTCTTCGAATCCATCATTTATCAAGTCCATGGTTCGGTCTCATGTTTATAGCTGTTTTTGGTTGGGTCTCCCTTCTAAGTTTTGTGAGGAATATCTTCCAAAAACTGTGTATAAGTATGACATGGTTTTAGAGGATGAAAATGGCTCCGAATATGAGGCTGTTTACATTGGCGAAAGAAGTGGGCTTAGTGGTGGCTGGAGAGCATTTGCATTGGAACATAAGTTGGATGATGGTGATGCACTTGTTTTTCAATTGGTTGAAGCAGCACGATTTAAGGTAATCTATGTTATCAGTTCTCATGTTATACTTGCCCTATCATCATGGATTAAACAATAA 735 0.4109 MAKGCSSNNYEEARKQRLEENKKRFEDLGISKISKKLTEIASPAKKKTPHLPKLKPKTNSVVEPRRSSRVRNPVPSYREEVSMDFQTSRKRSRSHSSSWGSYVARPLDEIKEATNEERSRALEAAEALQNNLQSSNPSFIKSMVRSHVYSCFWLGLPSKFCEEYLPKTVYKYDMVLEDENGSEYEAVYIGERSGLSGGWRAFALEHKLDDGDALVFQLVEAARFKVIYVISSHVILALSSWIKQ. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01232 244 SMART B3_2 139 233 IPR003340 GO:0003677
Seca7g01232 244 MobiDBLite consensus disorder prediction 1 26 - -
Seca7g01232 244 Coils Coil 111 131 - -
Seca7g01232 244 CDD B3_DNA 137 226 IPR003340 GO:0003677
Seca7g01232 244 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 58 232 IPR044837 -
Seca7g01232 244 Pfam B3 DNA binding domain 139 228 IPR003340 GO:0003677
Seca7g01232 244 ProSiteProfiles B3 DNA-binding domain profile. 139 232 IPR003340 GO:0003677
Seca7g01232 244 Gene3D - 113 232 IPR015300 -
Seca7g01232 244 MobiDBLite consensus disorder prediction 10 26 - -
Seca7g01232 244 Coils Coil 8 28 - -
Seca7g01232 244 MobiDBLite consensus disorder prediction 39 99 - -
Seca7g01232 244 SUPERFAMILY DNA-binding pseudobarrel domain 133 231 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01232 Seca-Chr7 18696695 18699363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01232 10 230 B3 DNA Binding Superfamily AT5G58280 51.793 7.15e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca7g01232 B3 8.8e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01232 - - gmx:100786265 331.257