Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01199 ATGAGTCCAAGATTTCAACCGTACGCCGAGAACATTGACGTCGGCTCGCCGCTGGCACGCTACTTCTTCGTCGGATCTCCAATTTCCGGGAAGGTCGCTTCCTCTGGCGAGGCCTTCACTCCTCCGACGTTCAGCTCCGGCAAGTACAGGTCCGCGAAAGCGTTACATTACGGCGGAAACAGTAGCTTCGGTTCTCGCAATAGATTGTCGCTTTCTTCAATTGAGAACTTGGAGATCATGTCGCCGCCGATTTACGGCACGCCGGTGAAGGTAGACGGGGAAGTTCTTGTGATAGATGATATTCTGGTGAGGCCAATGTCGGGAGGTAAGAACGGAAGGTCTTCATCTTCCTCAGGCCGGGGTTCATCATCGTCGTCGTCATCGTCAGAGAACGTGTTCAAGACGGAGCTTTGCAGAGCGTGGGAGGAATCTGGAAACTGCCACTACAACTCCAAATGCCAGGTGATTTAA 471 0.5287 MSPRFQPYAENIDVGSPLARYFFVGSPISGKVASSGEAFTPPTFSSGKYRSAKALHYGGNSSFGSRNRLSLSSIENLEIMSPPIYGTPVKVDGEVLVIDDILVRPMSGGKNGRSSSSSGRGSSSSSSSSENVFKTELCRAWEESGNCHYNSKCQVI. 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01199 156 MobiDBLite consensus disorder prediction 107 131 - -
Seca7g01199 156 ProSiteProfiles Zinc finger C3H1-type profile. 133 154 IPR000571 GO:0046872
Seca7g01199 156 Gene3D - 124 156 - -
Seca7g01199 156 MobiDBLite consensus disorder prediction 109 131 - -
Seca7g01199 156 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 133 154 IPR000571 GO:0046872
Seca7g01199 156 PANTHER CCCH ZINC FINGER/TIS11-RELATED 73 154 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01199 Seca-Chr7 17466327 17466797 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca7g01199 zf-CCCH 2e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01199 - K18753 gmx:102665928 158.303