Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01193 ATGAAGCTTTCAACATCAGGGATGGGTCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTTTGAATTCTGAACTATGGCATGCATGTGCGGGTCCCTTAGTGTCCCTACCGACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGCGAGCAGGTTGCTGCCACAACTAATAGAGAAGTTGATGGGCACATTCCCAATTACCCGAGCTTGCCACCCCAGTTGATTTGCCAACTTCATAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACTCTACAGCCATTGACTCCGCAAGAGCAAAAGGATACATTTCTTCCTATGGAATTGGGCATTCCAAGTAAGCAGCCCTCAAATTATTTTTGTAAGACATTGACGGCAAGTGACACCAGCACACATGGAGGGTTCTCTGTTCCCCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAACCACCTGCACAAGAACTAATTGCTAGGGATCTTCATGATGTTGAGTGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACAACAGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTTGTGGCTGGAGATTCTGTGCTTTTCATTTGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAATCGGCCACAAACTGTTATGCCATCATCAGTTCTATCCAGTGATAGTATGCACATTGGGCTTCTTGCAGCTGCTGCCCATGCTGCAGCAACTAATAGCTGTTTTACAGTATTTTATAATCCAAGGGCTAGTCCATCTGAGTTCGTCATACCACTTTCAAAATATATCAAAGCTGTATACCATACACGTGTTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAAACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATAAGTGATCTGGATCCTGTTCGCTGGCCGAATTCTCATTGGCGGTCTGTCAAGGTTGGTTGGGATGAATCAACAGCAGGAGAGAGACAACCACGGGTATCATTATGGGAAATTGAGCCTTTAACAACATTTCCGATGTATCCATCACTTTTTCCCCTCAGATTGAAACGACCATGGCATCCCGGCACGTCTTCTTTTCATGATGGCAGAGATGACCCAACTAATGGGCTAATGTGGCTGAGAGGTGGACCTGGAGATCAAGGTCTCAATTCCCTGAATTTTCAAGGTGCTGGTTTGTTGCCCTGGATGCAGCAGAGACTGGATCCAACTTTGCTTGGAAATGATCATAATCAGCAATACCAAGCCATGTTGGCAGCTGGTTTGCAGAACATAGGGAGTGGAGATCTATTGAGGCAGCAAATGATGAATTTTCAACAGCCTTTCAATTATGTCCAACAGTCAGGAAACCCCAATCCTGCTTTGCAGCTTCAGCAAGCAATTCAGCAACCCATATCTTCTAATATCCTGCAGCCACAAACCCAAGTATTGGCAGAGAACCTGTCTCAACACCTCCTTCAGAAATCACACAACAATCGAGAAGACCAAGCGGCGCAGCAGCAGCAACAACACACTTATCAAGATTCTCTTTTAATCCAAGGTGATCAACTCCATCAGAGGCAACACTCCAGTTTGCCTTCACCATCATATTCAAAACAAGATTTCTTAGATTCAAACATCAAGTTTGCTGCTTCAGTTTCACCAGGACAAAACATGCTCAGTTCTCTTGGTTCTGAAGGGAGTGGCAATCTCTTGAATTTATCCAGAAGTGGTCAGTCCATGATGACCGAACAGTTACCCCAACAATCATGGGCCCAAAAGTATACACCTTTGCAGGTCAATGCCTTTAGCAACTCAATGTCACATGTGCAATATTCTGGAAAAGATACTGCAATGGTGCCACCACATGGTAACTCAGATCCCCAAAATCCTATTCTATTTGGTGTCAATATCGATTCATCTGGGCTTCTGCTCCCTACCACTGTCCCTCGTTATACCACCGCACCAACTGATACTGATGCAACAACAATGCCATTAGGGGAGTCTGGATTCCAGGGTTCCCTATATCCTTGCATGCAAGATTCATCAGAGTTGTTGCAAAGTGCAGGGCAAGTTGACGCCCAAAACCAGACGCGAACATTTGTCAAGGTATACAAAACAGGTTCAGTAGGGCGATCACTTGACATCTCCCGGTTCAGCAGCTATCATGAGCTGCGCGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTAGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTACATCAAAATACTCTCACCTGAAGATATTCAGAAAATGGGAGAACAAGCCGTAGAATCCCTTGGTCCAAGTTCAGGACAAAGGCTGAATAGCAGTGGTGCAGAATCTCATGACATTGTTTCTGGACTACCATCAATAGGCTCACTTGAATACTGA 2532 0.451 MKLSTSGMGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGRDDPTNGLMWLRGGPGDQGLNSLNFQGAGLLPWMQQRLDPTLLGNDHNQQYQAMLAAGLQNIGSGDLLRQQMMNFQQPFNYVQQSGNPNPALQLQQAIQQPISSNILQPQTQVLAENLSQHLLQKSHNNREDQAAQQQQQHTYQDSLLIQGDQLHQRQHSSLPSPSYSKQDFLDSNIKFAASVSPGQNMLSSLGSEGSGNLLNLSRSGQSMMTEQLPQQSWAQKYTPLQVNAFSNSMSHVQYSGKDTAMVPPHGNSDPQNPILFGVNIDSSGLLLPTTVPRYTTAPTDTDATTMPLGESGFQGSLYPCMQDSSELLQSAGQVDAQNQTRTFVKVYKTGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLGPSSGQRLNSSGAESHDIVSGLPSIGSLEY. 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01193 843 FunFam Auxin response factor 292 364 - -
Seca7g01193 843 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Seca7g01193 843 SUPERFAMILY CAD & PB1 domains 715 791 - -
Seca7g01193 843 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 806 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca7g01193 843 FunFam Auxin response factor 712 806 - -
Seca7g01193 843 SMART B3_2 128 230 IPR003340 GO:0003677
Seca7g01193 843 Gene3D - 126 229 IPR015300 -
Seca7g01193 843 ProSiteProfiles PB1 domain profile. 717 801 IPR000270 GO:0005515
Seca7g01193 843 Gene3D - 292 364 - -
Seca7g01193 843 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Seca7g01193 843 CDD B3_DNA 127 228 IPR003340 GO:0003677
Seca7g01193 843 MobiDBLite consensus disorder prediction 811 830 - -
Seca7g01193 843 Pfam AUX/IAA family 710 801 IPR033389 -
Seca7g01193 843 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Seca7g01193 843 Gene3D - 712 806 - -
Seca7g01193 843 FunFam Auxin response factor 126 230 - -
Seca7g01193 843 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01193 Seca-Chr7 17389140 17398601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01193 98 814 B3 DNA Binding Superfamily AT5G37020 69.793 0.0 954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca7g01193 AUX_IAA 5.3e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01193 - - gmx:100780393 1551.18