Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01167 ATGGCACCTGTTTCATTGCCACCAGGTTTCAGGTTCCACCCTACAGATGAAGAACTTGTTGCTTATTACCTAAAAAGGAAGATCAATGGTCGTAAGATTGAGTTGGAAATCATAGCTGAAGTTGATCTCTATAAGTGTGAACCATGGGACTTGCCAGGGAAGTCATTGTTACCAGGAAATGATTTGGAGTGGTATTTTTTTAGCCCTCGAGATAGGAAGTACCCAAATGGATCAAGAACAAACCGTGCAACAAAATCTGGATATTGGAAGGCTACAGGGAAGGATAGAAAAGTAAACTCTCAAGGTAGAGCTGTTGGTATGAAGAAAACCCTAGTTTACTATCGAGGAAGAGCACCCCATGGTTGTAGAACCAATTGGGTTATGCATGAATATCGTCTTGATGAGAGGGAATGTGAAACCCCTTCAGGCTTGCAGGATGCATATGCTCTTTGCCGTGTGTTCAAGAAGACTGCAGTGATTGCACCAAAAGTTGGGGGGCATTATGTTAATGTTACTAGCCATGCCAACCACCAGATTACAAGTGATCAGTCATCAAGCATTGAGTTATACTCTGAAGGAAGGGGTGAAGATTTAGATAGCTCAAATTATATGATGGGGCCCATGGATATTACTAATTGCTCACCCCACAATATGAGAAATATTGACTCTTCTCCCAATAATATCAATGGTGCTGGAACAAGGGATCATGGGAAATGGTCACATTTTTCACAAGAAGACTTATTTAGTCTTCCAACTTCTTCATTTCCTAATTATGGAGCCATAACATACCCTCCATCCAAGGTAGATATAGCACTAGAGTGTGCAAGGATGCAACATAGGTTTGCTATGCCTCCATTGGAGGTGGAGGACTTCCCTCAAGTTGGAATCTCTGAGCTGAAGATGACACAAGCATCTGGTGCCATGCATGGAAGCAGAACTGAAACAGATATATTGGAAGAAATTCTTTCAGTTGCTCATGTTTCTCAAGAATTGATAAATCAGCCCAACATTAACTACTCACAAGCATGGGGTGGCAATGAAAATAATTATGCTTCTCGTGAAGATGATTTTACTTTCATGGTTAATGGCACAAACTACAATAATATAAATGATCACATGAGATATGTTGACAAAACATGGGAAGATCCAAACACAAGGTCGATAGAGATTGGAGATCTGGATGAAGAATTCAAGGCTGAGAGGATGGTGGAGAATTTAAGATGGGTTGGGATGTCTACAAAAGATTTAGAAAAGGTATACATGGAAGAACAAAGGATCGTTCCAATTGAGGATATTTCAAGCTTCCAAACAAACAGGGAAGAAAATGAGGTGCAAGAATCTGAGCAAAACAACAACAAAAAGGAACACAATAACCCTGATATCAATGATTTCTCATTAGGCTTCATTAATGATGGTGATCCCAACGACAACTTTATAGAAGATGGTAACATGGATGATTATTCAAGTTCTCCAAGCTTTGAGGTCATTGAGGAAATAAAGGTTAGTCATGGATTGTTTGTTTCAACTGGTCAAGTAGCCATGACATTCTTTCACCAAATAGTTCCTTCACAAACCCTCCAAGTGCACCTCAATCCAGTAATGATGGTAAACAATGATCATTCTATAGAGAATGCAGAGGCAATAATGATGATAGTGGAGAACCAAGGGTCTTTCATTAGCAAGTTTAAGGCCTATGTGATGGGGAAACTCATAAAGCCATCTAAGACAATAGCAAGTGTGATTGTATTCTTCTTTGCACTTTTGTTGATGCCTATGAAGGATGAAGTGGAATTTTGGAAACCAAACCCTAAGAATGTGAAGGATAAATGTTGTGTTAGTGATACCGACATGAAGAGAATGGGACAATCTTATGATGAGATATTCAAATGGAATGAGTCAAATGAGGTTTGGTTTGTTGGTGTCAAAAGTGAGAAAGGATTAAGTGCGGTCTTGAAGAAAATTGGCATTTTCCTCACCATATCCTTGGCTCTTTGTACCATGTGGGCTAACCACAATATAGTTAACCCTTGA 2031 0.3949 MAPVSLPPGFRFHPTDEELVAYYLKRKINGRKIELEIIAEVDLYKCEPWDLPGKSLLPGNDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQGRAVGMKKTLVYYRGRAPHGCRTNWVMHEYRLDERECETPSGLQDAYALCRVFKKTAVIAPKVGGHYVNVTSHANHQITSDQSSSIELYSEGRGEDLDSSNYMMGPMDITNCSPHNMRNIDSSPNNINGAGTRDHGKWSHFSQEDLFSLPTSSFPNYGAITYPPSKVDIALECARMQHRFAMPPLEVEDFPQVGISELKMTQASGAMHGSRTETDILEEILSVAHVSQELINQPNINYSQAWGGNENNYASREDDFTFMVNGTNYNNINDHMRYVDKTWEDPNTRSIEIGDLDEEFKAERMVENLRWVGMSTKDLEKVYMEEQRIVPIEDISSFQTNREENEVQESEQNNNKKEHNNPDINDFSLGFINDGDPNDNFIEDGNMDDYSSSPSFEVIEEIKVSHGLFVSTGQVAMTFFHQIVPSQTLQVHLNPVMMVNNDHSIENAEAIMMIVENQGSFISKFKAYVMGKLIKPSKTIASVIVFFFALLLMPMKDEVEFWKPNPKNVKDKCCVSDTDMKRMGQSYDEIFKWNESNEVWFVGVKSEKGLSAVLKKIGIFLTISLALCTMWANHNIVNP. 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01167 676 Coils Coil 437 457 - -
Seca7g01167 676 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Seca7g01167 676 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Seca7g01167 676 MobiDBLite consensus disorder prediction 441 460 - -
Seca7g01167 676 FunFam Nac domain-containing protein 86 15 159 - -
Seca7g01167 676 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 245 - -
Seca7g01167 676 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Seca7g01167 676 MobiDBLite consensus disorder prediction 432 467 - -
Seca7g01167 676 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01167 Seca-Chr7 16993967 16998691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01167 1 590 NAC Transcription Factor Family AT1G65910 46.333 2.36e-161 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca7g01167 NAM 1.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01167 - - gmx:100809019 952.584