Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01162 ATGCAGGGTCAAAATGGATTTACTAGATCACAGGGTGGTCTTCCAGTTGGAAATGGAGCATCCTTAAATTCTGGGTTGCATTCTGTTGCACGTATTCAAAAACTGAATGATCAGTTTTCTTGTGGAAATGACTATGCCTTGAAGGTAAGGAAACCTTATACTATCACCAAGCAGAGAGAAAGGTGGACAGATGAAGAACATAAGAAATTCCTTGAAGCTTTAAAGCTGTATGGCCGAGCCTGGCGACGGATTGAAGAACATGTTGGCACAAAGACAGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTACTAAGGTTGATTGCTCTATTCCAGTACCTATCATCTACCATATTATTAATATAACATACCAGCAGATTCTTAGAGACTCTAGTGGGAATAGTACAACCTCTGTGGAATCAATTGAAATTCCACCTCCACGTCCAAAGAGAAAGCCAAATCATCCTTACCCGCGTAAACTAGTAGAGATCCCAAATAATGAATTTTCCATCTCAGAACAGCCACTGAGGTCTAATTCTCTTAAGTCATCAGATTTTGGTCAAGAAAACAAATCTCCCAAATCAGTATTATCTGCAGTTATTTCAGAAACCCTTGGATCCTCAGATTCCGATACTCCAACTGGAAGTTTGTCCCCAGTTTCATCCATCAGTGCTGTCAATACCAGAAGCTTTCCACTAATTGAACCCAAAACATCATCTGAGGAAGATGGTTCTCCACCCCAAAATGGACTAATTGCTGGTTCAGCTCATGATATGGAACCTCTTGTGAAACTCGAGCTTTTCTCTAAGGAAAGTGCTTCTACAAAAGATGATGCAGCAGAAGAATCATCTGGTAGAACTCTCAAACTTTTTGGAACAACTTTGCTGGTAACAGATCCCTGCAGACCATCTTCTCCTCCAACAATGGAGACATGTAAACCAATACCTTCTACCATGTATCTTATGCAACAACTTCAGAGTGGATGTTCAGACATTGCAACTATTGTTCCTTGGTGGACTCTTTCCCACAATGCACCATCCATGCCACTGCACAAGGAGTCTGAGGGGAAACATCTATATTCTAACCATGGAGAATGTGAAGATAAGGAAGTTCAAAAGGAAGGATCTTGGACTGGTTCCAACACTAGTTCAATTAATGATGGAGAGAGCAATGAAAGATCATCATATGATCAAGCAAAAAGCACTCATGTGCATTCCCTTATAGGAAACACTAGACCAAGTGAAACATCAGCTATATCTGAGCTAAGGGTGAGGCCTAAAACCTGTGGGAAAGGTTTTGTACCATATAAAAGGTGTTTGGCAGAGAGAGAAAACCAGTGCTCACCAAATGAGGAGAGGGAAGAGCAACGTATCAGGCTTTCCTTATAG 1389 0.4104 MQGQNGFTRSQGGLPVGNGASLNSGLHSVARIQKLNDQFSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFTKVDCSIPVPIIYHIINITYQQILRDSSGNSTTSVESIEIPPPRPKRKPNHPYPRKLVEIPNNEFSISEQPLRSNSLKSSDFGQENKSPKSVLSAVISETLGSSDSDTPTGSLSPVSSISAVNTRSFPLIEPKTSSEEDGSPPQNGLIAGSAHDMEPLVKLELFSKESASTKDDAAEESSGRTLKLFGTTLLVTDPCRPSSPPTMETCKPIPSTMYLMQQLQSGCSDIATIVPWWTLSHNAPSMPLHKESEGKHLYSNHGECEDKEVQKEGSWTGSNTSSINDGESNERSSYDQAKSTHVHSLIGNTRPSETSAISELRVRPKTCGKGFVPYKRCLAERENQCSPNEEREEQRIRLSL. 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01162 462 CDD SANT 61 104 IPR001005 -
Seca7g01162 462 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Seca7g01162 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Seca7g01162 462 SMART sant 58 106 IPR001005 -
Seca7g01162 462 Gene3D - 61 109 - -
Seca7g01162 462 ProSiteProfiles SANT domain profile. 57 108 IPR017884 -
Seca7g01162 462 FunFam protein REVEILLE 6 isoform X1 61 109 - -
Seca7g01162 462 NCBIfam myb-like DNA-binding domain, SHAQKYF class 57 106 IPR006447 GO:0003677
Seca7g01162 462 MobiDBLite consensus disorder prediction 167 195 - -
Seca7g01162 462 MobiDBLite consensus disorder prediction 400 418 - -
Seca7g01162 462 Pfam Myb-like DNA-binding domain 59 102 IPR001005 -
Seca7g01162 462 MobiDBLite consensus disorder prediction 135 195 - -
Seca7g01162 462 SUPERFAMILY Homeodomain-like 53 107 IPR009057 -
Seca7g01162 462 PANTHER SWI/SNF COMPLEX-RELATED 42 388 - -
Seca7g01162 462 MobiDBLite consensus disorder prediction 375 392 - -
Seca7g01162 462 MobiDBLite consensus disorder prediction 235 254 - -
Seca7g01162 462 MobiDBLite consensus disorder prediction 365 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01162 Seca-Chr7 16952096 16954865 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca7g01162 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01162 - - gmx:778060 613.994