Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01140 ATGAAGAAGATGAGCAATGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGCGAGCTTTGCACCTTATGTGGTGCTAATGTTGCTCTCATTGTGTTCTCACCTGGTGAGAAGGTCTTCTCCTTTGGTCACCCCAACGTCGATGCGGTTATCAATCGCTATCTGACGCGGGTCCTACCGCAAAACTCTGGCACCATGCAGTTCATTGAGGCTCACCGCAGTGCCAATGTGTGTGAGTTGAACGCACAACTGGCTCGGATCAATAGCCAACTCGAGAGTGAGAGGAAGCATGGTGATGAGTTGAACCGTATGCGAAAAGCAGCGCAAGCTCAGTTCTGGTGGGCTTATCCCATTGAGGAGATGAATAAAGTTCAACTTGAACAATTCAAGTTGGCCTTAGAGGAGCTTAAGAAACATGTTACTGACTATTGTGATAGGCTCCTCATTCAAGGTGCTGCTTCCGCTGCTTCTGCTGTTGCACCACCTGCTGGCTCCTCTTCCAACCACCCTCTCCTTCAGCCACCTCCTCCACCTCAGGTGTTTCCACCACAGTTCTTTCAGAACCCTATGCTGCAAAATCATTTGTTTGATCATGGAAGCTTGATGCACCACCATGGATTTAACAACTTGGGAGGGTATGGAACTCCTAGATTCTTCTGA 684 0.4883 MKKMSNESNLQVTFSKRRSGLFKKASELCTLCGANVALIVFSPGEKVFSFGHPNVDAVINRYLTRVLPQNSGTMQFIEAHRSANVCELNAQLARINSQLESERKHGDELNRMRKAAQAQFWWAYPIEEMNKVQLEQFKLALEELKKHVTDYCDRLLIQGAASAASAVAPPAGSSSNHPLLQPPPPPQVFPPQFFQNPMLQNHLFDHGSLMHHHGFNNLGGYGTPRFF. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01140 227 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Seca7g01140 227 MobiDBLite consensus disorder prediction 167 191 - -
Seca7g01140 227 Gene3D - 74 163 - -
Seca7g01140 227 MobiDBLite consensus disorder prediction 176 191 - -
Seca7g01140 227 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Seca7g01140 227 PANTHER MADS BOX PROTEIN 1 149 - -
Seca7g01140 227 FunFam Agamous-like MADS-box protein AGL62 6 72 - -
Seca7g01140 227 Gene3D - 6 73 IPR036879 GO:0003677|GO:0046983
Seca7g01140 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 50 IPR002100 GO:0003677|GO:0046983
Seca7g01140 227 SUPERFAMILY SRF-like 1 67 IPR036879 GO:0003677|GO:0046983
Seca7g01140 227 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Seca7g01140 227 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01140 Seca-Chr7 16450923 16451645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01140 1 176 Type I MADS-box Gene Family AT5G60440 52.151 2.27e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca7g01140 SRF-TF 2.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01140 - - gmx:100780445 266.159