Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01137 ATGGTGTTGTCATGGACAAGAGGGAGAGTTTTTCGCCGTGCCCGCAAAGGGAAAGAGCTGAATAATTGTGGTGATTTGGAGGTGGAAATTGCTATTCCCACCCATTTTCGTTGCCCTGTGAGTTTAGACTTGATGAAGGACCCTGTCACACTTTCCACAGGGATCACCTACGACAGGGACAGCATCGAGAAATGGGTTGAAGCAGGGAACCACACATGCCCTGTTACCAAAAGGGAGTTAACAACTTTTGACATGATCCCAAATCACGCAATTCGAAGGATGATTCAAGATTGGTGCGTTGAGAATCGTTCTTTTGGGATTGAAAGGATCCCAACTCCTCGTATTCCTGTTACCCCTTACGAGGTTTCAGACACATGTTCCAGGATCCTCTCTGCTTCACAAAATGGGGATGACCAAAAAGTTCTTGAATTGGTGAGAAAAATCAAATCTTGGGGGAAAGAGAGTGAGAGGAACAAGAGGTGCATAGTTTCCAATGGTTCTGCTCCTCTTGTTCTAGCTAGTGCTTTTGATTCTTTCTCACGTGGGTCTGTTGAGAAAAACGTGGTTGTTTTGGAGGAGATCTTAGGGGTTTTGACTTGGATGCGTCCTATTGTTGAAGAGGGTAGATCTGTTTTAGGGTCTTTGCCTTCTTTGAATTGCATGGTTTGGTTCTTAAATGATAAACAACTTTCCACAAGACAGAATGCAGCTTTGTTGCTCAAGGAAATGTCTGTTGAGGCATTGGCTAAAACTGAAGGGATTGTTGAGTCTTTGGTTAAGATGATTAGGGAGCCTATTGGGCCTGCTGCTACCAAAGCATGTTTGTCAACAATTTTTCACTTGGTTTCCTCATCAGAGAACAAAAGGGTAATTTCAGTGAGATTTGTGGAATTGGGTTTGGTTTCACTCTTGTTGGAGACCCTTGTTGATGCTGAAAGAGGGATCTGTGAGAAGGCTTTAGGGGTGTTGAATTCAATTTGTGATTGCAAAGAAGGAAAAGATGCAGCAAAGTCAAATGCTTTGACTTTGCCTCTTGTGATTAAGAAGCTTTTGAGGGTGTCTGAATTGAGTTCTAGTTTTGCAGTTTCTATTCTTTGGAAGCTTTGTGATAAGGCTGAGGAAGGGGTGTTAATTGAGGCACTTCAAGTTGGGGTGTTTCAGAAACTCCTTGTTCTTCTTCAAGTGGGGTGTGGGGAGAGTACAAAGGAAAAGGCTACTGAGTTGTTGAGATTATTGAATGGTTATAGGAGCAAAGCAGAGTGTGTTGATTCATCATTGGATTTCAAGCACCTTAAGAAGCTCTTCTAA 1308 0.4274 MVLSWTRGRVFRRARKGKELNNCGDLEVEIAIPTHFRCPVSLDLMKDPVTLSTGITYDRDSIEKWVEAGNHTCPVTKRELTTFDMIPNHAIRRMIQDWCVENRSFGIERIPTPRIPVTPYEVSDTCSRILSASQNGDDQKVLELVRKIKSWGKESERNKRCIVSNGSAPLVLASAFDSFSRGSVEKNVVVLEEILGVLTWMRPIVEEGRSVLGSLPSLNCMVWFLNDKQLSTRQNAALLLKEMSVEALAKTEGIVESLVKMIREPIGPAATKACLSTIFHLVSSSENKRVISVRFVELGLVSLLLETLVDAERGICEKALGVLNSICDCKEGKDAAKSNALTLPLVIKKLLRVSELSSSFAVSILWKLCDKAEEGVLIEALQVGVFQKLLVLLQVGCGESTKEKATELLRLLNGYRSKAECVDSSLDFKHLKKLF. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01137 435 Gene3D - 121 421 IPR011989 -
Seca7g01137 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 105 IPR013083 -
Seca7g01137 435 SUPERFAMILY ARM repeat 124 413 IPR016024 -
Seca7g01137 435 CDD RING-Ubox_PUB 33 85 IPR045210 -
Seca7g01137 435 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Seca7g01137 435 FunFam RING-type E3 ubiquitin transferase 26 108 - -
Seca7g01137 435 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Seca7g01137 435 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Seca7g01137 435 SUPERFAMILY RING/U-box 28 107 - -
Seca7g01137 435 PANTHER WDSAM1 PROTEIN 29 422 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01137 Seca-Chr7 16315821 16317128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01137 27 435 U-box Gene Family AT5G37490 47.356 1.03e-123 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01137 - - gmx:100795913 664.84