Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01132 ATGTCTTTCTCTCTCATCGACGCCTGTAAGAAGAGAAAGCGATGGCCCAAGATTTTCAGGTTGCACTCTTTCGCTGACCCTGGTTGCCCCATTGCACCTTCGGGTCCTTTCCGTGACAATGTTCGGTTCTTTCTTCAAGAAGCTGGAGAACTCGAAGATTACACTGTCTTGGGTAATCCCCTTTGGTGCACCCTTCTCATCCACGACAAGACCAATCTAATGGCTCCTTTCTACACCCTCGAAGAGGACGTTTACCATTCTTCTCATCCCTTCTGTGACCATTGCCGCTGTGTAGGTTGGAGTGGCCATTATGTAACTAAAAGAAGGTACCATTTCATAATCCCAATGGACAATGGATGGCATAAACCCTTAGGTGAAGGTGCACTTGAAAATCAGAGTCATCTTTTGCATGGGGTAATTCATTGCAATGGGTATGGCCATTTGCTCTGTCTTAATGGGATTGAAGGGGGTTCCAAAGTTCTCAGTGGAAGAGAGATCATGGATCTATGGGATAGGATCTGCACCAACCTTCGAGCAAGGAAAATTGCGGTGGAAGATGCTTCAAGGAAGAGGTCTATGGATCTTCGCTTACTTCATGGAGTTGCTTATGGACACTCTTGGTTTGGTAGATGGGGCTATAGATTTTGTCGTGGAAGCTTTGGAGTGACAGAGCAAAACTACTATGAAGCAATTGAAACTCTTGGTTCTTTGGAGCTCAATGAGATTGTAAGAGATTTAAGTAAGACAAAGTACTACAAAGAAATCAAACAAATGATTCGGTGCTATAGAGATATGAGTGAAACACAGATTATCACAATCAGGGATCTTCTCAGATTTATGCTTACTGTCAAGTCTCGTGCTCCTGTGTCTAAGATTACAATCACTTCTTCTTCTGCTGCTACTTCTTCTCCTTGTTCTACTCCAGCATTCATCTCAAGAAATTCAACCAAACATGCATTTTCAAACAGATTAAATCCCATGAAGGAAAAATCTGCAAGGTATAAGAAGTTCAGCATTGCAGTTGCTAATATGGATAGTAGGTGGCCTACAAGGAGATTAGAGTTTGCAGCTCAAGTGATTGTAGATGCACTGAAAGAGGACAAGGCTATCAAATCAGATTCTGGTGGGATGACAAGGCAAGATGTAAGAGATGCAGCTAGGCTCCACATTGGTGACACAGGCTTGCTTGATTATGTGCTGAAATCTCTAAACAATGTGATTGTTGGGAATTATGTTGTGCGCCGCATGGTGAATCCATCAACTAGGATCCTGGAATATACCATTCATGAGCTTGGCAAAGGGTTCAAATCCCCTGAAATGGATCCTGGGGTAATGCCTATTGTAGAATGCCAAGTAGAGTCATCTTGGGTGCCTGGTAATGATGTTTACAGTGATGTATTTTATCTGTACAAGAATGTGCTATTGAGTTATCCAGATTCAGAGCCAGTGGACTTGGCAGTTCAGACAATTCTGGATAGCAGACATTTTGTGAAGGTTTGGACATTAAGGGATGAAATGGAGCAAGTTTTGACATTCATTTGCCGCTTGAAACCAAATTTTGTTGACAATAAGTCTGAGTTGAAAGGACCACCTTGTTGTGGTGAGATTGTAGTGGTTCCACTGCATGCAACTGTTGGAGACTTGAAGCAAGCTGCTGAGGCTGCTTTGAGGGACACTTATTGCATTGCAGAAAGACTGATAGTAACAGACATCACAGAATTGATGGGAGTGAGTGATGAGGAAGTGCTTTTTGGACTAATACAGTCAGGTGTGGAACTTTGTGTGAGGGGAATTGCTATAGATTTGTGTACTCCATTGAAGTATCAAGGAGGGTCTGATAACTGGAAGGTGAGATGTGAGTGTGGAGCTCAGGATGATGATGGGGAGAGAATGGTGTCTTGTGACATTTGTGAGGTGTGGCAGCATACACGATGTTGTGGCATAGATGATTCTGAGACAGTGCCACCATTGTTTGTGTGCTCTGGGTGCTGTGATTCACTTGTACCTCCAAGGATTGAATCTAGCTATAGTATGGATTGTGCTGATGATTTTCTGATTTCAGCAGAGCCTACCAACTTGCTGGAGTATGGGTATGGGTACTGA 2103 0.4313 MSFSLIDACKKRKRWPKIFRLHSFADPGCPIAPSGPFRDNVRFFLQEAGELEDYTVLGNPLWCTLLIHDKTNLMAPFYTLEEDVYHSSHPFCDHCRCVGWSGHYVTKRRYHFIIPMDNGWHKPLGEGALENQSHLLHGVIHCNGYGHLLCLNGIEGGSKVLSGREIMDLWDRICTNLRARKIAVEDASRKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSFGVTEQNYYEAIETLGSLELNEIVRDLSKTKYYKEIKQMIRCYRDMSETQIITIRDLLRFMLTVKSRAPVSKITITSSSAATSSPCSTPAFISRNSTKHAFSNRLNPMKEKSARYKKFSIAVANMDSRWPTRRLEFAAQVIVDALKEDKAIKSDSGGMTRQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNYVVRRMVNPSTRILEYTIHELGKGFKSPEMDPGVMPIVECQVESSWVPGNDVYSDVFYLYKNVLLSYPDSEPVDLAVQTILDSRHFVKVWTLRDEMEQVLTFICRLKPNFVDNKSELKGPPCCGEIVVVPLHATVGDLKQAAEAALRDTYCIAERLIVTDITELMGVSDEEVLFGLIQSGVELCVRGIAIDLCTPLKYQGGSDNWKVRCECGAQDDDGERMVSCDICEVWQHTRCCGIDDSETVPPLFVCSGCCDSLVPPRIESSYSMDCADDFLISAEPTNLLEYGYGY. 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01132 700 CDD PHD_MMD1_like 619 663 - -
Seca7g01132 700 SMART PHD_3 618 664 IPR001965 -
Seca7g01132 700 SUPERFAMILY FYVE/PHD zinc finger 611 670 IPR011011 -
Seca7g01132 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 667 IPR013083 -
Seca7g01132 700 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 672 - -
Seca7g01132 700 ProSitePatterns Zinc finger PHD-type signature. 619 663 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01132 Seca-Chr7 16081274 16083866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01132 10 669 PHD Transcription Factor Family AT5G22260 34.225 2.26e-124 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01132 K26271 - gmx:100797388 1115.91