Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01129 ATGTGCTCAACAGCAATTTCATCCTTGAAAGACTTGAAGGGACAAGGAAAAGTAACTGGATATAGGCCTGTGCTTTTACTCCATGTCTACCCATTTACTGAAATCATCACTTCTACTTTCAAGGTTATTAAGCTCCATGAGGAATTCTTTCTTCCAGGGGAAGTTGTAATGGAACAAGGAAATGTTGTAGATCAACTATATTTTGTCTGTCATGGTGTGCTGGAGGAAGTAGGCATAGCTGAAGATGGGTCTGAAGAAACTGTTTCACTTCTACAGCCTAACAGTACATTTGGAGAAATATCCATTCTTTGCAACATTCCTCAGCCATATACTGTTCGTGTCTGTGAACTGTGCAGGGTCCTGCGGCTTGATAAACAATCATTTACAAATATCCTAGAAATATACTTCTATGATGGAAAGAAAGTATTAGACAACCTTCTAGAGGGAAAAGAGTCTCTTCGAGGTAAGCAATTGGAGTCAGACATCAACTTTCATATTGGAAAGCTAGAAGCTGAACTTGCTTTGAAGGTCAACAGAGCAGCCTTTGATGGGGATCTATATCAGCTTAAAGGTTTGATTCGAGCTGGAGCTGATGCCAACAAGACAGATTATGATGGAAGGTCACCTTTGCATCTTGCGGCGTCAAGAGGATATGAAGATATCACACTTTTCCTTATTCAAGAAGGTGTAGACGTCAACATCAAAGATAACTTTGGGAACACACCTTTACTTGAAGCAGTTAAGAATGGACATGATCGTGTTGCTTCTTTACTTGTTAAAGAAGGGGCTACTATGAGGATAGAAAATGCTGGTAGTTTATTATGTACAGCAGTTGCAAGGGGAGATTCGGATTATCTCAATAGGCTTTTATCTAATGGAATGGATCCAAATTTGAAAGATTATGATTACCGTACCCCTCTTCATGTTGCTGCAGCTGAAGGTTTACACTTCATGACTAAGTTGTTATTAGATGCTGGAGCTAGTGTTTTTACCAAAGACAGATGGGGAAACACCCCGCTTGATGAAGCCCGGATGTGTGGAAATAAGAATCTGATCAAGCTACTGGAAGGTGCAAAATCTGCTCAATTGTCAGAATTCCCATGTCCTTCCCAAGAATTTACAGATAAAATGCACCCAAAGAAGTGCACGGTGTTCCCTTTCCACCCGTGGGATCCAAAAGAACAAAGAAGAAATGGAATTGTATTATGGGTTCCACAAACCATTGAAGAGCTAATTAAAGCAGCAGCAGAGCAAATAGGATTTTCTAGGGATTGTTGTATTTTATCCGAAGATGCTGGTAAAATTACTGATGTGGACATGATTAAGGATAATCAGAAACTGTATTTAGTCCATGAAAAACATTAA 1365 0.3956 MCSTAISSLKDLKGQGKVTGYRPVLLLHVYPFTEIITSTFKVIKLHEEFFLPGEVVMEQGNVVDQLYFVCHGVLEEVGIAEDGSEETVSLLQPNSTFGEISILCNIPQPYTVRVCELCRVLRLDKQSFTNILEIYFYDGKKVLDNLLEGKESLRGKQLESDINFHIGKLEAELALKVNRAAFDGDLYQLKGLIRAGADANKTDYDGRSPLHLAASRGYEDITLFLIQEGVDVNIKDNFGNTPLLEAVKNGHDRVASLLVKEGATMRIENAGSLLCTAVARGDSDYLNRLLSNGMDPNLKDYDYRTPLHVAAAEGLHFMTKLLLDAGASVFTKDRWGNTPLDEARMCGNKNLIKLLEGAKSAQLSEFPCPSQEFTDKMHPKKCTVFPFHPWDPKEQRRNGIVLWVPQTIEELIKAAAEQIGFSRDCCILSEDAGKITDVDMIKDNQKLYLVHEKH. 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01129 454 ProSiteProfiles KHA domain profile. 381 454 IPR021789 -
Seca7g01129 454 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Seca7g01129 454 CDD CAP_ED 44 135 IPR000595 -
Seca7g01129 454 Pfam Cyclic nucleotide-binding domain 49 133 IPR000595 -
Seca7g01129 454 SUPERFAMILY Ankyrin repeat 178 356 IPR036770 -
Seca7g01129 454 ProSiteProfiles Ankyrin repeat region circular profile. 302 334 - -
Seca7g01129 454 ProSiteProfiles Ankyrin repeat profile. 238 270 IPR002110 GO:0005515
Seca7g01129 454 Pfam KHA, dimerisation domain of potassium ion channel 380 449 IPR021789 -
Seca7g01129 454 SUPERFAMILY cAMP-binding domain-like 40 147 IPR018490 -
Seca7g01129 454 ProSiteProfiles Ankyrin repeat region circular profile. 238 269 - -
Seca7g01129 454 ProSiteProfiles Ankyrin repeat profile. 269 301 IPR002110 GO:0005515
Seca7g01129 454 PRINTS Ankyrin repeat signature 318 332 IPR002110 GO:0005515
Seca7g01129 454 PRINTS Ankyrin repeat signature 206 221 IPR002110 GO:0005515
Seca7g01129 454 ProSiteProfiles cAMP/cGMP binding motif profile. 45 132 IPR000595 -
Seca7g01129 454 ProSiteProfiles Ankyrin repeat profile. 302 334 IPR002110 GO:0005515
Seca7g01129 454 FunFam Gated outwardly-rectifying K+ channel 244 370 - -
Seca7g01129 454 PANTHER POTASSIUM CHANNEL AKT1 42 451 IPR045319 GO:0005249|GO:0006813
Seca7g01129 454 Pfam Ankyrin repeats (3 copies) 180 266 IPR002110 GO:0005515
Seca7g01129 454 Pfam Ankyrin repeats (3 copies) 275 355 IPR002110 GO:0005515
Seca7g01129 454 FunFam Potassium channel KAT2 27 154 - -
Seca7g01129 454 Gene3D Jelly Rolls 40 157 IPR014710 -
Seca7g01129 454 SMART cnmp_10 23 147 IPR000595 -
Seca7g01129 454 SMART ANK_2a 238 267 IPR002110 GO:0005515
Seca7g01129 454 SMART ANK_2a 302 331 IPR002110 GO:0005515
Seca7g01129 454 SMART ANK_2a 205 234 IPR002110 GO:0005515
Seca7g01129 454 SMART ANK_2a 335 365 IPR002110 GO:0005515
Seca7g01129 454 SMART ANK_2a 269 298 IPR002110 GO:0005515
Seca7g01129 454 ProSiteProfiles Ankyrin repeat region circular profile. 205 237 - -
Seca7g01129 454 Gene3D - 271 365 IPR036770 -
Seca7g01129 454 Gene3D - 163 270 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01129 Seca-Chr7 16061207 16064797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01129 276 358 Ion Channels AT5G37500 35.514 1.45e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01129 K21867 - gmx:100814385 745.347