Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01115 ATGAAGAAGATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGCAGTGGGCTCTTCAAGAAAGCCAGCGAGCTTTGCATTCTATGTGGTGCTAATGTTGCTCTCATCGTGTTCTCACCCGGTGAGAAGGTCTTCTCCTTTGGCCACCCCAATGTCAATGCGGTTATCAATCGCTATTTAAGGCGGGTCCCACCACAAAACTCGGGCACCATGCAGTTCATTGAGGCTCACCGCAGTGCCAACGTGCATGAGATGAACGCGCAATTGGCTCAGATCAATAGCCAACTTGAGGGTGAGAGGAAGCATGGTGAAGAGTTGAACCGTATGCGGAAAGCAGCGCAAGCTCAGTTGGCCTTAGAGGAGCTTAAGAAACATGTTACTCACTATTGTGATAGGCTCCTCATTCAAGGTGCTACTTCTCATATTTTTACTGTTGCACCACCTGCTGGCTCCTCCTCCAACCTCCCTCTCCTTCAGACACCCCCTCCACCTCAGGTGTTTCAACCACAGTTCCTTCAGAACCCTATGCTGCAGAATCATTTGTTTGATCATGGAAGCTTGATGCGCCACCATGGATTTAACAACTTGGGAGGGTATGGAAATCGTAGATTCTTTTGA 627 0.4912 MKKMSNESNLQVTFSKRRSGLFKKASELCILCGANVALIVFSPGEKVFSFGHPNVNAVINRYLRRVPPQNSGTMQFIEAHRSANVHEMNAQLAQINSQLEGERKHGEELNRMRKAAQAQLALEELKKHVTHYCDRLLIQGATSHIFTVAPPAGSSSNLPLLQTPPPPQVFQPQFLQNPMLQNHLFDHGSLMRHHGFNNLGGYGNRRFF. 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01115 208 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Seca7g01115 208 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Seca7g01115 208 FunFam Agamous-like MADS-box protein AGL62 6 72 - -
Seca7g01115 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 50 IPR002100 GO:0003677|GO:0046983
Seca7g01115 208 Gene3D - 74 131 - -
Seca7g01115 208 Gene3D - 6 73 IPR036879 GO:0003677|GO:0046983
Seca7g01115 208 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Seca7g01115 208 CDD MADS_MEF2_like 1 63 IPR033896 GO:0000977|GO:0045944
Seca7g01115 208 PANTHER MADS BOX PROTEIN 1 130 - -
Seca7g01115 208 SUPERFAMILY SRF-like 1 69 IPR036879 GO:0003677|GO:0046983
Seca7g01115 208 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01115 Seca-Chr7 15718459 15719178 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01115 1 157 Type I MADS-box Gene Family AT5G60440 48.603 1.06e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca7g01115 SRF-TF 2.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01115 - - gmx:100794751 241.891