Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01114 ATGAAGAAGATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGTCGCAATGGGCTCTTCAAGAAAGCCAGCGAGCTTTGCACTCTATGTGGTGCTAATGTTGCTCTCATTGTCTTCTCACCTGGTCTGAAGGTCTTCTCCTTTGGCCACCCCAATGTCGATGCGGTTATCAATCGCTATCTGAAGCGGGTCCCACCACAAAACTCGGGCACCATGCAGTTCATTGAGGCTCACCGCAACGCCAACGTGCATGAGATGAACGCGCAATTGGCTCAGATCAATAACCAACTTGAGAATGAGAGGAAGCATGGTGAAGAGTTGAACCGTATGCAGAAAGCAGCACAAGCTCAGTTCTTGTGGGCTTATCCCGTTGAGGAGATGAATAGAGTTCATCTTGAACAATTCAAGTTTGCCTTAGAAGAGCTTAAAAAACATGTTACTCACTATTGTGATAGGCTCCTCATTCAAGGTGCTACTTCTGTTGCTGCTGCCACCAACCCAACACCACCTGTTGGCTCCTCTTCCAACCTCCCTCTCCTTCAGACACCCCCTCCACCTCAGGTGTTTCCACCGCAGTTCCTTCAGAACCCTATGATGCAGAATCATTTGTTTGATCATGGGAGCTTGATGCGCCACCATGGATTTAACAACTTGGGAGGGTATGGAAATCCTAGATTCTTCTGA 690 0.4812 MKKMSNESNLQVTFSKRRNGLFKKASELCTLCGANVALIVFSPGLKVFSFGHPNVDAVINRYLKRVPPQNSGTMQFIEAHRNANVHEMNAQLAQINNQLENERKHGEELNRMQKAAQAQFLWAYPVEEMNRVHLEQFKFALEELKKHVTHYCDRLLIQGATSVAAATNPTPPVGSSSNLPLLQTPPPPQVFPPQFLQNPMMQNHLFDHGSLMRHHGFNNLGGYGNPRFF. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01114 229 SUPERFAMILY SRF-like 1 69 IPR036879 GO:0003677|GO:0046983
Seca7g01114 229 Gene3D - 6 73 IPR036879 GO:0003677|GO:0046983
Seca7g01114 229 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Seca7g01114 229 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Seca7g01114 229 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Seca7g01114 229 CDD MADS_MEF2_like 1 64 IPR033896 GO:0000977|GO:0045944
Seca7g01114 229 PANTHER MADS BOX PROTEIN 1 149 - -
Seca7g01114 229 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Seca7g01114 229 FunFam Agamous-like MADS-box protein AGL62 6 72 - -
Seca7g01114 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 50 IPR002100 GO:0003677|GO:0046983
Seca7g01114 229 Gene3D - 74 161 - -
Seca7g01114 229 Coils Coil 82 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01114 Seca-Chr7 15641492 15642211 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01114 1 208 Type I MADS-box Gene Family AT5G60440 47.887 1.48e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca7g01114 SRF-TF 5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01114 - - gmx:100794751 276.174