Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01100 ATGAAGTCTTCACCGGTGGAACAAGCGTTTCTGGTTTGTTTCACGGTGTGGGTTTTCGCCATTGTCGCCGGCGCCGATCTAGCTTCCGACAGGGCGAGTCTTCTGGCTCTCCGCAGCGCCGTCGGAGGGCGAACCCTCCTCTGGAACATGACGGAGACTTCCCCGTGTTCGTGGACCGGCGTTATCTGCGATAAGGGAAGGGTTACAGTTTTACGGTTACCGGGGATGGGTCTCTCCGGCAAGCTTCCGACGGGTTTAGGGAACCTGACCGAACTGCAGACACTTTCTCTACGGTTCAACGCTCTAACCGGACCCATTCCATCTGATTTCGCAAACCTCCAGGCTCTTCGGAACCTCTATCTTCACGGCAACTTCTTCTCCGGTGAAGTCCCTGATTTTCTGTTCAGTTTGCAGAACTTGGTGAGGTTGAATTTAGGTAGAAACAATTTCACCGGAGAGATCTCTTCAAAGTTCAATAGCCTCACTCGTTTGGATACTCTTTACTTGGAGCGAAACGGGTTCACTGGCTCCATCCCTGACCTCAGTGTTCCTCCTCTTCACCAGTTCAACGTGTCGTTTAACCAGTTAAACGGGTCAATTCCTGAGAGGTTTTCGCGTTTGGAAGAAAGCGCGTTTGTTGGGAATTCCCTTTGTGGGAAGCCCCTTCAACTTTGCCCTGGCTCTGGGAAGAGCAGCAACAAGTTATCTGGGGGAGCTATTACTGGGATTGTGATTGGTTCTTTGTTTGGTGTTTTGTTGATTCTGCTTCTTTTGTTCTTCTTGTGTAGAAAAAGAAAGGAAAGTGATGATGTGGCACCTAGCAAACGTGTTGAGGCTGAAGTGCAGGGTGAGAAGAGTGTTAGAGATGTTGAGAGTGGTGGTGGTGGTGTGAGTAATTCAGCTTCAGCTTCAGCAACAGCATCAGCTTCTGTTGTGGAAAAGAGTGATATGAAGAGTTTGGTGTTTATTGGGAATGTGAATAGACCTTTTTCTTTGGATGAGTTACTGAGGGCTTCAGCTGAAGTGTTGGGAAAAGGGACCTTTGGAACCACTTACAAGGCCACATTGGAGATGGGAACTAGTGTGGCTGTGAAGAGGTTGAAGGATGTTACTGCAACAGAGAGGGAATTCAGGGAGAAAATTGAGGAAGTGGGGAAGTTGGGTCATGAGAATTTGGTCCCACTTAGGGGTTATTATTTTAACAGGGATGAAAAGCTTATTGTGTATGATTACATGCCTATGGGAAGCTTATCTGCACTCTTACATGCAAACAATGGAGCTGGTAGGACTCCACTGAATTGGGAAACAAGGTCTGTCATAGCCCTTGGTGCTGCCCGTGGGATTGCATACCTTCATTCACAGGGTCCAACAGCCTCCCATGGAAATATCAAGTCATCAAATATCCTTCTAACCAAATCTTATGAAGCTCGTGTCTCTGACTTTGGCCTTGCATATCTTGCTCTCCCTACCTCCACTCCCAACCGCGTGTCCGGTTACCGTGCCCCAGAAGTCACTGATGCCCGGAAAGTTTCCCAGAAAGCTGATGTCTATAGCTTTGGCATAATGCTCTTGGAGCTGCTTACAGGGAAGGCTCCAACTCATTCTTCACTGAATGAAGAAGGGGTAGACCTACCAAGATGGGTCCAATCTGTGGTTCAAGAGGAGTGGAACACTGATGTTTTTGACATGGAGCTTCTCAGGTACCAAAATGTTGAGGAGGAAATGGTGAACCTCTTGCAGCTTGCACTTGAATGCACTGCTCAATACCCTGATAAGAGACCTTCAATGGATGTGGTTGCAAGCAGGATTGAAGAAATTTGTCATCCTAGTTTAGAGAAAGCAAAAGATGCAGCAGATAATGGGTTTTCCCAACAGTAA 1878 0.4755 MKSSPVEQAFLVCFTVWVFAIVAGADLASDRASLLALRSAVGGRTLLWNMTETSPCSWTGVICDKGRVTVLRLPGMGLSGKLPTGLGNLTELQTLSLRFNALTGPIPSDFANLQALRNLYLHGNFFSGEVPDFLFSLQNLVRLNLGRNNFTGEISSKFNSLTRLDTLYLERNGFTGSIPDLSVPPLHQFNVSFNQLNGSIPERFSRLEESAFVGNSLCGKPLQLCPGSGKSSNKLSGGAITGIVIGSLFGVLLILLLLFFLCRKRKESDDVAPSKRVEAEVQGEKSVRDVESGGGGVSNSASASATASASVVEKSDMKSLVFIGNVNRPFSLDELLRASAEVLGKGTFGTTYKATLEMGTSVAVKRLKDVTATEREFREKIEEVGKLGHENLVPLRGYYFNRDEKLIVYDYMPMGSLSALLHANNGAGRTPLNWETRSVIALGAARGIAYLHSQGPTASHGNIKSSNILLTKSYEARVSDFGLAYLALPTSTPNRVSGYRAPEVTDARKVSQKADVYSFGIMLLELLTGKAPTHSSLNEEGVDLPRWVQSVVQEEWNTDVFDMELLRYQNVEEEMVNLLQLALECTAQYPDKRPSMDVVASRIEEICHPSLEKAKDAADNGFSQQ. 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01100 625 MobiDBLite consensus disorder prediction 272 287 - -
Seca7g01100 625 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Seca7g01100 625 Gene3D Ribonuclease Inhibitor 183 228 IPR032675 -
Seca7g01100 625 ProSiteProfiles Protein kinase domain profile. 337 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g01100 625 MobiDBLite consensus disorder prediction 272 302 - -
Seca7g01100 625 FunFam pollen receptor-like kinase 1 306 411 - -
Seca7g01100 625 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Seca7g01100 625 Gene3D Ribonuclease Inhibitor 28 182 IPR032675 -
Seca7g01100 625 PANTHER OS05G0588300 PROTEIN 11 608 - -
Seca7g01100 625 SUPERFAMILY Protein kinase-like (PK-like) 341 602 IPR011009 -
Seca7g01100 625 Gene3D Transferase(Phosphotransferase) domain 1 412 622 - -
Seca7g01100 625 FunFam Probable inactive receptor kinase RLK902 27 182 - -
Seca7g01100 625 Pfam Protein kinase domain 340 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g01100 625 FunFam Probable inactive receptor kinase At1g48480 412 614 - -
Seca7g01100 625 CDD STKc_IRAK 343 606 - -
Seca7g01100 625 Gene3D Phosphorylase Kinase; domain 1 302 411 - -
Seca7g01100 625 SUPERFAMILY L domain-like 47 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01100 Seca-Chr7 15237284 15240555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01100 26 606 Receptor kinase-like Gene Family AT1G48480 58.958 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca7g01100 Pkinase 1.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01100 - - gmx:100801103 895.19