Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01097 ATGGGAAGACAACCTTGTTGTGACAAAGTTGGGTTGAAGAAAGGGCCATGGACTGCTGAAGAGGACAAGAAGCTCATCAACTTCATCCTCACTAATGGCCAATGTTGTTGGAGAGCTGTCCCTAAGCTAGCAGGGCTGTTAAGGTGTGGGAAGAGTTGTAGGCTAAGATGGACAAACTACCTTAGACCAGACTTAAAGAGAGGTCTTTTATCAGAATATGAAGAGAAAATGGTGATTGATCTCCATGCTCAACTTGGAAACAGATGGTCTAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAAATAAAAAACCATTGGAATACCCACATAAAGAAAAAGCTCAAGAAAATGGGCATTGATCCTGTCACACACAAACCACTCTCTAATGTAACTGAACAAACCCAAAATCAACCAAAACAACAAGAACAAGAAGAGCAAGTAGAAGAAGAAATTCAGAACCAACCAGTTGACTTTGACCCCAAATGTGAATCTGAAATTAACCAGAATAAGGAAGCAGAGAAGCCAGAGACTTCATTTGAGTCATCAACTATCACTGAAACCAAAGAGGAGGAAGACAAAATTATTATGTCACCACTATTTGACACAATGGAGATAATGGATGTGTTCTGTACAGATGAAGTTCCAATAATAGAACCTGATGAGATTCTAATGCCATGTGCTCCTTCCTCTTCATCAACCTCATCTTCATCATCTTCAAATTCAACCAATTTCCTTGAAGACTCTTCAAATTCAATTAATTTCCTTGAAGATCTGCAGCTACCAGATTTTGAGTGGTCTTGTAATTACAATGATAATGGTATTAGCATTAGCAATAACAATGAAGATAACAATAATAGCAGTATGGCATTTTGGGATGAAGACTTCATTAGCAGCTTGAATTTTCTGATTAATGATGATGAAGATGATGGTGGTGGTGATAGAAAACAACAATTTGATGGTTCTCTTAGTCAATACTCAAAAATGGTCATGGATCAAGAATCTTGGGCATATGGGTTGTTTTGA 1029 0.379 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLSNVTEQTQNQPKQQEQEEQVEEEIQNQPVDFDPKCESEINQNKEAEKPETSFESSTITETKEEEDKIIMSPLFDTMEIMDVFCTDEVPIIEPDEILMPCAPSSSSTSSSSSSNSTNFLEDSSNSINFLEDLQLPDFEWSCNYNDNGISISNNNEDNNNSSMAFWDEDFISSLNFLINDDEDDGGGDRKQQFDGSLSQYSKMVMDQESWAYGLF. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01097 342 SMART sant 66 114 IPR001005 -
Seca7g01097 342 SMART sant 13 63 IPR001005 -
Seca7g01097 342 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca7g01097 342 MobiDBLite consensus disorder prediction 128 143 - -
Seca7g01097 342 CDD SANT 16 61 IPR001005 -
Seca7g01097 342 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca7g01097 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca7g01097 342 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Seca7g01097 342 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca7g01097 342 Gene3D - 70 154 - -
Seca7g01097 342 FunFam MYB-related transcription factor 70 130 - -
Seca7g01097 342 FunFam MYB transcription factor 11 67 - -
Seca7g01097 342 PANTHER F14D16.11-RELATED 1 293 - -
Seca7g01097 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca7g01097 342 MobiDBLite consensus disorder prediction 123 195 - -
Seca7g01097 342 CDD SANT 74 112 IPR001005 -
Seca7g01097 342 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca7g01097 342 MobiDBLite consensus disorder prediction 165 195 - -
Seca7g01097 342 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01097 Seca-Chr7 15169504 15171821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01097 1 342 MYB Transcription Factor Family AT5G16600 49.587 3.33e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g01097 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01097 K09422 - gmx:100803624 456.062