Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01089 ATGGCTTCTTTGGATATGTCACTTGATGACAGGATAAAGAATAGGAGTAATAGAGGTAGAGGTAGAGGACGTGGCAGAGCCCAACCTGGCCGTGGGCCAGGTGGGACTCGTAATGGTGGAAGAATGACTGGTGCTGTTCGTAGAGGTCCTCTTATGGTTAATGCTCGGCCATCATCTTATGCCATTGCCAAGGTTCTCTTTTGCTACTCTGGAATCTATTCTGTTTGCTGTTTCCAGTCTATTCGCAGAACCAGGCCTTTTCCATGGCAGCATGATTTGTTTGAAGATAGCCTAAGAGCTGCAGGGATACAGGGAGTAGAAGCTGGCACAAAGTTGTATGTTTCAAACTTAGACCATGGAGTAACTAATGAAGACATAAGGGAACTTTTCTCTGAGATTGGAGACTTAAAGCGCTATGCAGTTCATTATGATAAAAATGGACATCCAAGTGGTTCAGCTGAAATTGTCTATTCTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAATAATGTACTTTTGGATGGGAAGCCCATGAAGATTGAGATTGTCGGTGCCAACGCAGAATTGGCAGTATCTGCTCGTGTAAATGTCACTGGAGTAAATGGGAAGAGGAAAAGGACAGTTGTAATGACGCCTGGAAGAGGTGGAACTGCACGCCCTGCTTTGCTTGGTCGTGGTGCTGCTAGGGGACGTCGTGGTGGTGCAAGGAGTGGGAGTGGACAAGGTCGAGGCCGAGGGCGTGGGCGTGGCAGGCATGGTGGTCGAGGTCGTGGGAAAAAAGATTCTGTTGAGAAGTCAGCTGAGGAACTTGACAAGGAACTGGAGACCTATCATGCTGAGGCTATGAACATCTCATAA 864 0.4688 MASLDMSLDDRIKNRSNRGRGRGRGRAQPGRGPGGTRNGGRMTGAVRRGPLMVNARPSSYAIAKVLFCYSGIYSVCCFQSIRRTRPFPWQHDLFEDSLRAAGIQGVEAGTKLYVSNLDHGVTNEDIRELFSEIGDLKRYAVHYDKNGHPSGSAEIVYSRRSDAFAALKRYNNVLLDGKPMKIEIVGANAELAVSARVNVTGVNGKRKRTVVMTPGRGGTARPALLGRGAARGRRGGARSGSGQGRGRGRGRGRHGGRGRGKKDSVEKSAEELDKELETYHAEAMNIS. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01089 287 Coils Coil 262 282 - -
Seca7g01089 287 Pfam C-terminal duplication domain of Friend of PRMT1 228 281 IPR025715 -
Seca7g01089 287 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 4 284 - -
Seca7g01089 287 SMART rrm1_1 111 183 IPR000504 GO:0003723
Seca7g01089 287 SMART FoP_duplication_2 214 287 IPR025715 -
Seca7g01089 287 MobiDBLite consensus disorder prediction 212 287 - -
Seca7g01089 287 CDD RRM_THOC4 110 184 - -
Seca7g01089 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Seca7g01089 287 SUPERFAMILY RNA-binding domain, RBD 14 184 IPR035979 GO:0003676
Seca7g01089 287 MobiDBLite consensus disorder prediction 259 280 - -
Seca7g01089 287 MobiDBLite consensus disorder prediction 1 45 - -
Seca7g01089 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 180 IPR000504 GO:0003723
Seca7g01089 287 Gene3D - 103 186 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01089 Seca-Chr7 15058427 15065962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01089 109 228 Eukaryotic Initiation Factors Gene Family AT2G23350 30.400 9.61e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01089 K12881 - gmx:100801491 353.214