Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01087 ATGGCCACTGAAGAGGTTAATAAACCTCCATCACATCCTCCATATCCTGAGATGATATTGAAAGCATTGGAAGCTCTGAATGAAGCTGGTGGATCAAACAAGTCAGCTATAGCAAAGTACATAGAAACTACTTATGGTGAGTTGCCAGAAGGCTCAACTCTTCTCTCTCAATACCTCAACAAGATGAAAGAGAGTGGGGAGCTTGTGTTCTTGAAGAACAACTACATGAAGCCTGACCCAAATGCCCCACCAAGAAGAGGCCGTGGCAGGCCACCCAAGCCTAAGGTTCCTTTGCCTCCAGGCACTGTTTTGACCCCACCAAGGCCAAGGGGTCGTCCTCCAAAGGACCCTAATGCCCCACCAAAGGCTAAGGTGTCCCCTGGAAGTGGCAGACCTAGAGGTAGGCCAAAGAAGATTGCTAGGTCGCCGGCGGTGACTGCTCCGGCGGCTGTTCCGGTGGCTGCTCCGACCACTCCCTCTAGTGGAAGGCCGAGGGGTAGGCCTCCTAAGGTGAAGCCTCAATTGACAGAAGTCAGTGTTGAATCATAG 549 0.5173 MATEEVNKPPSHPPYPEMILKALEALNEAGGSNKSAIAKYIETTYGELPEGSTLLSQYLNKMKESGELVFLKNNYMKPDPNAPPRRGRGRPPKPKVPLPPGTVLTPPRPRGRPPKDPNAPPKAKVSPGSGRPRGRPKKIARSPAVTAPAAVPVAAPTTPSSGRPRGRPPKVKPQLTEVSVES. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01087 182 MobiDBLite consensus disorder prediction 71 182 - -
Seca7g01087 182 PRINTS AT-hook-like domain signature 128 138 IPR017956 GO:0003677
Seca7g01087 182 PRINTS AT-hook-like domain signature 105 116 IPR017956 GO:0003677
Seca7g01087 182 PRINTS AT-hook-like domain signature 85 95 IPR017956 GO:0003677
Seca7g01087 182 SMART AT_hook_2 130 142 IPR017956 GO:0003677
Seca7g01087 182 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Seca7g01087 182 SMART AT_hook_2 107 119 IPR017956 GO:0003677
Seca7g01087 182 SMART AT_hook_2 162 174 IPR017956 GO:0003677
Seca7g01087 182 SMART h15plus2 9 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca7g01087 182 SUPERFAMILY "Winged helix" DNA-binding domain 8 92 IPR036390 -
Seca7g01087 182 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 79 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca7g01087 182 PANTHER HISTONE H1 8 173 - -
Seca7g01087 182 MobiDBLite consensus disorder prediction 93 121 - -
Seca7g01087 182 Gene3D - 7 84 IPR036388 -
Seca7g01087 182 CDD H15 9 69 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca7g01087 182 FunFam HMG-Y-related protein A 7 88 - -
Seca7g01087 182 Pfam linker histone H1 and H5 family 12 72 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01087 Seca-Chr7 15024123 15025835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01087 18 89 Single Myb Histone (SMH) Gene Family AT1G49950 36.000 2.81e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01087 - - gmx:100793697 189.889