Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01072 ATGCCTATACAGATATACCACATGCATATGGAGAAGACCAAAGGGGTGAGAAAAGGCGTATGGACATATGAGGAAGACAACCTACTAAAGGCTTGCATTAACAAGTATGGGGCAGGAAAATGGCATTTGGTTCCTGAAAAAGCAGGATTGAATAGGTGCCGAAAAAGTTGTAGATTGAGGTGGTTGAATTATTTAAATCCCAACATTAACAGAGGAAGCTTTGCTGAGGATGAAGTTGATATGATTCTAAGGCTACATAAACTCCTAGGCAACAGATGGTCATTGATTGCTGCAAGGCTTCCGGGTAGGACAGCTAACGATGTGAAGAACTATTGGCACACACACTTAAGCAAGAAGAAGGTGACTAATTATAGCAAGGAAGACAAGAGAGAAAAAGAGAAACCAATAAAGGAAACGATGGAATCTCATGAAGTTATAAAACCTCGACCTCGAACTTTTTCAAATAAATCACCATGGTTGAAGGGAAAACACATTGTTGTAAATAATGGTGGTGGTGTAACTAGAGAGTGTGCTATGCCTCTAGTGGCTTCAAATAGTAATGTTTTGACTAGAGAGTGTGACACACAGACAACTATGCTCCCACTTGGTGGTGATGGTGTTGGTGATGATAATGCCCCACAGTGGTGGGAGAGTTTGTTGAACATTGATGAAGACAATAATGTAGGAAGTGAAAAAGTTGGCACATGCTCTTTGTCAAGTGAGAATTCCATCTTGGAGTTTCCAAATATGGAAAACTTCTTTACTCAAGGCCCCATTGGTATTGACTGTTTATGGGATTCCAACCTTGATTTTGATGTTCTTTGGGATCTTTAA 834 0.4005 MPIQIYHMHMEKTKGVRKGVWTYEEDNLLKACINKYGAGKWHLVPEKAGLNRCRKSCRLRWLNYLNPNINRGSFAEDEVDMILRLHKLLGNRWSLIAARLPGRTANDVKNYWHTHLSKKKVTNYSKEDKREKEKPIKETMESHEVIKPRPRTFSNKSPWLKGKHIVVNNGGGVTRECAMPLVASNSNVLTRECDTQTTMLPLGGDGVGDDNAPQWWESLLNIDEDNNVGSEKVGTCSLSSENSILEFPNMENFFTQGPIGIDCLWDSNLDFDVLWDL. 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01072 277 CDD SANT 76 116 IPR001005 -
Seca7g01072 277 Pfam Myb-like DNA-binding domain 71 116 IPR001005 -
Seca7g01072 277 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Seca7g01072 277 FunFam Myb transcription factor 18 70 - -
Seca7g01072 277 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 13 143 - -
Seca7g01072 277 Gene3D - 73 145 - -
Seca7g01072 277 CDD SANT 21 65 IPR001005 -
Seca7g01072 277 Gene3D - 9 71 - -
Seca7g01072 277 SUPERFAMILY Homeodomain-like 15 112 IPR009057 -
Seca7g01072 277 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Seca7g01072 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Seca7g01072 277 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Seca7g01072 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Seca7g01072 277 SMART sant 17 67 IPR001005 -
Seca7g01072 277 SMART sant 70 118 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01072 Seca-Chr7 14547897 14549852 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01072 11 157 MYB Transcription Factor Family AT1G66370 63.226 9.69e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g01072 Myb_DNA-binding 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01072 - K16166 tpra:123921946 287.345