Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01057 ATGCAACTTTTATTCACCTTGATGCAACCTTACATTAATCCAATTTCAATTATTCAAAGACAACCACACCCACTTCTTATTTCTCCCTCTTCTGTTGAGAAAATATTCTCCAACCCAACAAGCAAAGCCACTTTTCTTCTTTATCTTTCTCTCTACCCTTTTGTTTTTTGTGTTTTTCTGTGCTGTTGTTGGGATATAGTATACTTCATGATGGTTTTCTCCCAAGGAACCTGCACTGTCAGTGACACTGACATCATGGATCCTTCCAATGCCCCAGATACTCCTCCACAAGTTTCCTCTGCAGTTGCAGATAACTTCTCTGACTACAAAAGGCTTAAATTCAGAACCTTTTTGAGAAAAATGATCTGGGAGTTTGCTTTTGCATGTGTTGCTGTTCCTTGTGGTGGCAAAAACGATGACAAAGGCCTCAAAAAGAAAACTTTGGAGCATAACAAGGTGTGGCTGCTGGCTGAGTCTGGTGGGTGTGGAGCAGAATTGGCAAGTGCTGAGCCTCAATCGGTTCACTCATCTTTCAGGTTCAGCTTCCGTTCTCAGGTTGAGGTTGAAGCCTTGAACTTGAGTTCTTCTGCTGCTGCTGCTGCGACCGTTTTGATGGTGAATTTGGAGTATGAATCTCGAGCAAGGGAGATTATGAAATGGAGGAAGATGGAGTCATTGGAGAGATGCATATCCCCAGTGGCCAACACTTTGATCAGGTTCAACTATGATGAAATTCTATCTGCTACTCGCAATTTCTCCAAAGGCAGAGTATTGGGGAGAGGAGGCTTGAGCTGTGTTTTCAGAGGAAAAGTTGGGTTTTTTAGGACCAGTGTTGCAATTAAACGGTTGAAGAATGATGACAAAGAGTGTGCCAAGGCGTTTTGCAGAGAATTGATGATTGCTAGTTCTCTTCAAAATGCAAACGTTGTTCCCCTTGTGGGATTTTGTATTGACTCAGAGGAGGGTTTGTTCTTGGTTTACAAGTATGTATCAGGGGGTAGCTTAGAGCATCACTTGCATGGGAAGAAGAAGAGTTTGAAGGGTGGTTCACCACTTTCATGGTCTGTGAGGTATAAAGTTGCAGTTGGGATTACAGAAGCTGTGGCTTATCTGCATAATGGAACAGAAAGATGTGTTGTTCACAGAGACATTAAGCCTTCAAACATTCTACTTTCCTCTAAGAAGATTCCCAAGTTATGTGATTTTGGATTAGCTTCATGGACTTCAGCACCTTCAGTTCCTTTCCTTTGTAAAACTGTCAAAGGAACATTTGGTTATTTGGCACCTGAGTACTTCCAACATGGGAAAGTATCAGATAAGACTGATGTTTATGCTTTAGGAGTTGTTTTGTTGGAACTCATAACTGGCCGAAAGCCAATTGAAGCAAAAAGGCCTCCAGGAGAGGAGAACTTGATCTTATGGGTGAGTTAA 1431 0.4193 MQLLFTLMQPYINPISIIQRQPHPLLISPSSVEKIFSNPTSKATFLLYLSLYPFVFCVFLCCCWDIVYFMMVFSQGTCTVSDTDIMDPSNAPDTPPQVSSAVADNFSDYKRLKFRTFLRKMIWEFAFACVAVPCGGKNDDKGLKKKTLEHNKVWLLAESGGCGAELASAEPQSVHSSFRFSFRSQVEVEALNLSSSAAAAATVLMVNLEYESRAREIMKWRKMESLERCISPVANTLIRFNYDEILSATRNFSKGRVLGRGGLSCVFRGKVGFFRTSVAIKRLKNDDKECAKAFCRELMIASSLQNANVVPLVGFCIDSEEGLFLVYKYVSGGSLEHHLHGKKKSLKGGSPLSWSVRYKVAVGITEAVAYLHNGTERCVVHRDIKPSNILLSSKKIPKLCDFGLASWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYALGVVLLELITGRKPIEAKRPPGEENLILWVS. 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01057 476 Pfam Protein kinase domain 253 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g01057 476 Gene3D Transferase(Phosphotransferase) domain 1 330 476 - -
Seca7g01057 476 Gene3D Phosphorylase Kinase; domain 1 212 329 - -
Seca7g01057 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 379 391 IPR008271 GO:0004672|GO:0006468
Seca7g01057 476 PANTHER OS08G0249100 PROTEIN 212 475 IPR046958 -
Seca7g01057 476 FunFam probable serine/threonine-protein kinase PBL7 212 329 - -
Seca7g01057 476 ProSiteProfiles Protein kinase domain profile. 252 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g01057 476 SUPERFAMILY Protein kinase-like (PK-like) 240 472 IPR011009 -
Seca7g01057 476 SMART serkin_6 252 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01057 Seca-Chr7 14314302 14316399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01057 238 475 Trihelix Transcription Factor Family AT1G70460 43.277 3.37e-58 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca7g01057 Pkinase 3.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01057 - - gmx:100802176 558.91