Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01050 TTAAATTTGATATGCTTAATTATTGTTTATGGTAGGGAGAGATTGGATGAGATAGGGAAGAAGATCAAGAGGGAAGGAGATCATGTTTCTTCTCCTCAAATGGGAAGGAGACAAATGTTGGGTCCACCTGGAACCCTAAATACCATAACCCCTTGTGCAGCATGTAAGCTATTGAGAGGATGTGCCCAAGAATGTCCCTTTTCTCCATATTTCTCTCCCCATGAGCCCCAAAAGTTTGCTTCTGTCCACAGTTTTCGTTGCCAGCAACGTCTCAAAGATGCTAATGGTGAACTCAATGCAGTAAGAGCTGAAATACTTAAATACAAACTCAGGGAAGCTAACATCATCATACCCTCTTCTCATGTTGCAATTCTCCCTTCCTCTGCTGCTGCTGTTTCAATAATGGAGCCTTTTTCAAGGGACCATGGATGGAGCCTTTTTCTCAGGGACCATGGTAAATGGCACCCTTGA 471 0.431 LNLICLIIVYGRERLDEIGKKIKREGDHVSSPQMGRRQMLGPPGTLNTITPCAACKLLRGCAQECPFSPYFSPHEPQKFASVHSFRCQQRLKDANGELNAVRAEILKYKLREANIIIPSSHVAILPSSAAAVSIMEPFSRDHGWSLFLRDHGKWHP. 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01050 156 Pfam Lateral organ boundaries (LOB) domain 51 89 IPR004883 -
Seca7g01050 156 Coils Coil 91 111 - -
Seca7g01050 156 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 47 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01050 Seca-Chr7 14231962 14232703 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01050 36 135 AS2 family AT2G40470 44.595 7.95e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca7g01050 LOB 3.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01050 - - gmx:100786324 165.622