Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01043 ATGGAATTGGAAAGTACTCCTCCGCCTCCGCCGTGTGATGGCACTGAAATAGAGGCAACGCCGGTGGCTGTACGGCGATCCATGGAGCTGCTTCAAATGGACGATCCAGATTTGAAGATCCAAGCCGCGCGTGAAATTCGCCGTCTCACTAAGAACTCCCACCGTTGCCGCCGTCAGCTCCGTCAAGCCGTTGCCCCACTCGTTTCCATGCTCCGAGTCGACTCGCCCGAGTCAAATGAACCCGCTCTTCTCGCCTTGCTTAACCTCGCCGTCCAAGACGAAAAGAACAAAATTAACATTGTGGAAGCTGGTGCATTAGAACCAATAATTAGTTTCCTCAAGTCTCAAAATCCCAATATGCAGGAGTATGCAACTGCATCTTTGCTCACTCTATCTGCCTCTACAACCAACAAACCAATTATTAGTTCTTATGGCACCATTCCTCTTCTTGTGGAGATTCTTAGAGATGGAAGCTCACAAGCTAAAATTGATTCTGTAATGGCTCTGTCCAATTTATCAACACACCCTGACAACCTCAGCATCATTCTTGAAACAAATCCAATCCCTCTTATAGTTGATCTTCTCAAGACCTGTAAGAAATCCTCAAAAACAGCTGAAAAATGCTGTGGTTTGATAGAGTCCTTGGTGGGTTATGATGAGGGAAGAACTTCCTTAACATCTGAAGAAGGTGGGGTTCTTGCAGTTGTGGAAGTTCTTGAAAATGGGACTCCTCAAAGCAGGGAACATGCTGTTGGGGCACTGCTTACAATGTGCCAAAGTGATAGGTGTAAATACAGAGAACCAATTCTTAGGGAAGGTGTTATTCCAGGACTTCTTGAGCTAACTGTTCAAGGAACACCAAAGTCTCAGCCAAAGGCACGTACCCTTTTGCAGTTACTAAGAGAATCTCCTTATTCAAGATCTGAAATTGAACCTGACACTCTTGAGAACATAGTGTGTGACATCATATCACAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTAGCTGAGATGGTCCAAGTTAGCATGGAACAGAGTTTGAGACATTTACAACAAAGAGCTCTTGTATGCACCACAACTAGTGATATTCCTATTACTAGTTGTGCTTCTGAAGTTTCTTCAAAATGA 1140 0.443 MELESTPPPPPCDGTEIEATPVAVRRSMELLQMDDPDLKIQAAREIRRLTKNSHRCRRQLRQAVAPLVSMLRVDSPESNEPALLALLNLAVQDEKNKINIVEAGALEPIISFLKSQNPNMQEYATASLLTLSASTTNKPIISSYGTIPLLVEILRDGSSQAKIDSVMALSNLSTHPDNLSIILETNPIPLIVDLLKTCKKSSKTAEKCCGLIESLVGYDEGRTSLTSEEGGVLAVVEVLENGTPQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQPKARTLLQLLRESPYSRSEIEPDTLENIVCDIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTTTSDIPITSCASEVSSK. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01043 379 FunFam U-box domain-containing protein 4 12 360 - -
Seca7g01043 379 Gene3D - 14 365 IPR011989 -
Seca7g01043 379 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 62 104 IPR000225 GO:0005515
Seca7g01043 379 Pfam Armadillo/beta-catenin-like repeat 94 132 IPR000225 GO:0005515
Seca7g01043 379 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 145 187 IPR000225 GO:0005515
Seca7g01043 379 PANTHER U BOX DOMAIN-CONTAINING 16 304 - -
Seca7g01043 379 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 104 146 IPR000225 GO:0005515
Seca7g01043 379 SUPERFAMILY ARM repeat 29 328 IPR016024 -
Seca7g01043 379 SMART arm_5 93 133 IPR000225 GO:0005515
Seca7g01043 379 SMART arm_5 175 217 IPR000225 GO:0005515
Seca7g01043 379 SMART arm_5 52 91 IPR000225 GO:0005515
Seca7g01043 379 SMART arm_5 134 174 IPR000225 GO:0005515
Seca7g01043 379 SMART arm_5 219 259 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01043 Seca-Chr7 14068590 14075194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01043 24 301 U-box Gene Family AT2G23140 32.500 1.04e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01043 - - gmx:100793971 573.548