Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01042 ATGGCCACCAAATCTGAAGAGATCCAAGAAGAAGACATGTCAATGTCAAGTATGGAAGAAGGTCTTGTTACCCCAAGCATTATGCAACGTTGTTGTTCATCAAACTATGTTGTAACCTTGATACAGAAGGTGATTGCAGAATTAATCGGCACATATTTTGTGATATTTGCTGGTTGTGGGGCTGTAGCAGTGAATAAGATCTTTGAATCTGTCACGTTTCCAGGAATTTGTATCACATGGGGACTCATTGTAATGGTCATGTCTTACTCTGTTGGTCATATCTCTGGAGGTCACTTCAACCCTGCAGTTACAATCACTTGGGCCATCTTTCGCAGGGTCCCCTTTAAAGAGGTGCCACTGTACATTATTGCTCAGTTGCTGGGTTCCACACTTGCAAGTGGCACATTAGCACTAATGTTTGATGTCACACAAAAATCTTACTTTGGAACTCTACCAGTTGGATCCAATAGCCAGTCTCTAGTTGTTGAAATCATCATCACCTTTCTCTTGATGTTTGTTATATCTGCTGTTTCAACAGATGACAGAGCGGTGGGTCACTTGGCAGGAGTTGTAGTTGGAATGACTATAATGTTGAATGTCTTTGTGGCAGGGCCTATATCAGGAGCCTCAATGAATCCAGCAAGAAGTATTGGTCCTGCAATTGTGAAACATGTTTACAAAGGATTATGGATATACATAGTTGGTCCAATTATTGGAGCCATAGCTGGAGCATTTGTCTATAACTTACTTAGATCTACAGACAGGCCACTTATAGAGTTAACCAGAGGACCATCCCTGAGTTGA 804 0.4154 MATKSEEIQEEDMSMSSMEEGLVTPSIMQRCCSSNYVVTLIQKVIAELIGTYFVIFAGCGAVAVNKIFESVTFPGICITWGLIVMVMSYSVGHISGGHFNPAVTITWAIFRRVPFKEVPLYIIAQLLGSTLASGTLALMFDVTQKSYFGTLPVGSNSQSLVVEIIITFLLMFVISAVSTDDRAVGHLAGVVVGMTIMLNVFVAGPISGASMNPARSIGPAIVKHVYKGLWIYIVGPIIGAIAGAFVYNLLRSTDRPLIELTRGPSLS. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01042 267 SUPERFAMILY Aquaporin-like 37 258 IPR023271 -
Seca7g01042 267 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Seca7g01042 267 NCBIfam MIP family channel protein 46 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g01042 267 Pfam Major intrinsic protein 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g01042 267 PANTHER AQUAPORIN NIP2-1 16 255 IPR034294 -
Seca7g01042 267 CDD MIP 42 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g01042 267 Gene3D Glycerol uptake facilitator protein. 2 257 IPR023271 -
Seca7g01042 267 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g01042 267 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g01042 267 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g01042 267 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g01042 267 PRINTS Major intrinsic protein family signature 42 61 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca7g01042 267 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01042 Seca-Chr7 14061111 14063033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01042 1 266 Major Intrinsic Protein MIP AT5G37820 63.333 2.71e-118 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01042 K09874 - twl:119988879 372.859