Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01018 ATGTTGTTACAAAAAAAGAACGTGGGGTTGTTAAGGAAGATAGAGGAGCTTTCCATACTTTGTGGTATCCCTACATGCTCAATCATCTCTGGTCCAGGTGATACTAAGCCTAAAATATGGCCATCCCCTGAAGTGGCTAAACTACTACAGAGGCTTGAGGAAGTTCCAAAGGGTGTTAAGTCCAGAAAAGTGGTTACCCAATTGTCTTTTATGCGTGATAAGACAAAAAAGTTAGAAAATCAACTTGTCAGGCTTAAGGAGAGAAACAATGAGAAATATATGTCAATTTTAATGCATCAAATCCATCATGATGGTAAGTCTTTATCTGATTTTGAGCCTAATGATTTGAAGTGTTTACTTGGTTATGTGGAGCAAAAACTGAACAAAGTTAGAATGAGAACCAAGCATTTTAAGCAGGTGTTGCCTCCTCCTCCTCCTCCACCACCACCAGTGTCTTGTCCTCAAGAGAATGAGGTCCTAAAGAAACAATCATCCTTAGATTTGGTGAAAGAGGTTTATCAATTGAATGGTGGTTTTGATAATGATAATAATATAGGTAGTAGCAGCATGGGGCTACAACCACCACATGCAAATCTTAGTGATGTTGATAAGGTGTTGCCCCAAGAGAATTTTGGAGGTTTTAATAATGTATGTGATTTAGGGGTGTTTCCTCCAAGCAATTTTGGAGATCTCATTGGTGAAAATGACCTAGGGTCAAATGTGTTCTCTCTTAGTTATTTTGGAGGCTTCATTAGTGAGAGTGACTCAAGGTTAAGGGCATTTCGTCTAGAGAAGTTTGGAGGTCTCATTGGTGAACATGATCACTTGGGGTCAAAGGTGTGGCCATCTCGAGGCAATTTTGGAGGTCTCAATGGTGAAAGTGATTTAGTAATGTTGCTTGAAGACAATTTTGAAGGTCTCACTGGTGAAAGGGGTGATAGTTCACAGGTGTGGCCTGGAGGCAATTTTGGAGATCTCAATGATGGAAGTGATCTCTTAGAGATGTATAATTTTGAAGGTCTCAATGGTGAAAGTGGTGATGGTTCACAGGTGTTTCTTGAAGGCATTTTTGGAGATCTCAATGATAGAAGTTATCTCTTAAAGATGTTGTTTGAAGGTAATTTTGAAGGTCTCAATGGTGAAAGTAATTCAAGGCTTCTGAATGGAAGCTCTATTGATAAAATTGGAGGCAGTAACATATGGCCATCTTATGGACATTTTGAAAATACAATTGATGGAAGTTACATGGAAATAGAGCAACATAATGAAAATCAAGGAGGGTTCATTAACAACTCTGGAGCCAACACTCATGCAGCTGCCATGGGGAGATTCGATGCAAACTTTGTTGGCAATAACAATGGAAATAACTTGAATTTTGAATTGCCTACTCATGGAAATTTTGCTAGTAGAAGTGAATTTGGAAGTGATACTCAAGTGCCTACATCATTTGGAGGAAAGTTTCCTTGA 1467 0.3885 MLLQKKNVGLLRKIEELSILCGIPTCSIISGPGDTKPKIWPSPEVAKLLQRLEEVPKGVKSRKVVTQLSFMRDKTKKLENQLVRLKERNNEKYMSILMHQIHHDGKSLSDFEPNDLKCLLGYVEQKLNKVRMRTKHFKQVLPPPPPPPPPVSCPQENEVLKKQSSLDLVKEVYQLNGGFDNDNNIGSSSMGLQPPHANLSDVDKVLPQENFGGFNNVCDLGVFPPSNFGDLIGENDLGSNVFSLSYFGGFISESDSRLRAFRLEKFGGLIGEHDHLGSKVWPSRGNFGGLNGESDLVMLLEDNFEGLTGERGDSSQVWPGGNFGDLNDGSDLLEMYNFEGLNGESGDGSQVFLEGIFGDLNDRSYLLKMLFEGNFEGLNGESNSRLLNGSSIDKIGGSNIWPSYGHFENTIDGSYMEIEQHNENQGGFINNSGANTHAAAMGRFDANFVGNNNGNNLNFELPTHGNFASRSEFGSDTQVPTSFGGKFP. 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01018 488 Coils Coil 68 88 - -
Seca7g01018 488 Gene3D - 2 78 IPR036879 GO:0003677|GO:0046983
Seca7g01018 488 SUPERFAMILY SRF-like 4 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01018 Seca-Chr7 13320258 13321724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01018 3 151 Type I MADS-box Gene Family AT2G40210 34.000 5.18e-17 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca7g01018 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01018 - - gmx:106798339 198.749