Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01014 ATGAGAAAGCCTTGTTGTGACAAAGAAAGTATGAACAAAGGTGCTTGGTCTAAGCAAGAAGATCAAAAGCTCATTGATTACATTCGAGTTCATGGTGAAGGATGTTGGCGCTCCATTCCCAAGGCTGCTGGATTAATTACCATCATATATTCAGGGCTGCATCGTTGTGGCAAAAGTTGTAGGCTAAGATGGTTAAACTACTTACGACCAGACATCAAACGTGGAATCTTTGCTCAAGATGAAGAAGACCTCATCATCAAACTCCATGCCCTACTTGGCAATCGGTGGTCACTGATAGCTGGAAGGTTGCCAGGACGTACAGACAACGAGGTGAAGAACTATTGGAATTCTCACATTCGTAGAAAGCTAATAAAGATGGGAATTGATCCAAATAACCATAAGCTACACCAAACCTTATTTCCTCCTCCTCCTCCTGAGGGTGAATCATCATCATCTAGGTCATTGAACAAAGAGCAAACTAGAGTCTCTAATTTCTTCAAATCCTGTCTTGAAGAAGAAGAAACAACAATTAATTCATCATCTCCCTTAAATCTTGACCTAACCATTGCTTTACCTTCGCCTACTCTCCTTGAAAACAAGCCTATACCTAATTCTCATATTGATCTTAATTGTTAA 636 0.4009 MRKPCCDKESMNKGAWSKQEDQKLIDYIRVHGEGCWRSIPKAAGLITIIYSGLHRCGKSCRLRWLNYLRPDIKRGIFAQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKLHQTLFPPPPPEGESSSSRSLNKEQTRVSNFFKSCLEEEETTINSSSPLNLDLTIALPSPTLLENKPIPNSHIDLNC. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01014 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Seca7g01014 211 SMART sant 12 70 IPR001005 -
Seca7g01014 211 SMART sant 73 121 IPR001005 -
Seca7g01014 211 SUPERFAMILY Homeodomain-like 11 115 IPR009057 -
Seca7g01014 211 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Seca7g01014 211 CDD SANT 79 119 IPR001005 -
Seca7g01014 211 FunFam MYB-related transcription factor 12 73 - -
Seca7g01014 211 Pfam Myb-like DNA-binding domain 13 68 IPR001005 -
Seca7g01014 211 Pfam Myb-like DNA-binding domain 77 118 IPR001005 -
Seca7g01014 211 Gene3D - 13 73 - -
Seca7g01014 211 MobiDBLite consensus disorder prediction 134 158 - -
Seca7g01014 211 FunFam Transcription repressor MYB4 76 141 - -
Seca7g01014 211 CDD SANT 15 68 IPR001005 -
Seca7g01014 211 Gene3D - 76 139 - -
Seca7g01014 211 ProSiteProfiles Myb-like domain profile. 8 68 IPR001005 -
Seca7g01014 211 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 171 - -
Seca7g01014 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 68 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01014 Seca-Chr7 13248640 13250390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01014 2 192 MYB Transcription Factor Family AT4G38620 52.582 2.31e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g01014 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01014 K09422 - gmx:100793444 299.671