Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g01008 ATGGGTTGCTGCTTTAGTGCCAGAATCAAAGCTGAGAGCCCTCCACGCAATGGTTTGAGTTCAAAGGATGGTAACAAAGAAGAGTATGGCTCAAATGGTCAAAGCACAGCCTCAACTCCCACTACTGTCCCTCAAACTCCTCGGACCGAGGGTGAGATCTTGAAGTCCTCCAATATGAAGAGCTTCACCTATAGTGAGCTAAAGATTGCTACAAGGAACTTTCGTCCTGATAGTGTGGTGGGTGAAGGTGGATTTGGTTGTGTATTTAAAGGTTGGATTGATGAGCAGACACTTGCACCGGTTAAACCAGGGACTGGAAAGGTCATTGCTGTGAAGAGGCTTAACCAAGAAGGGTTGCAAGGACACAGTGAATGGTTGACAGAAATCAATTACCTGGGGCAGCTGCATCATCCTAATCTTGTGAAACTGATTGGTTACTGCTTAGAGGATGACCAACGGCTTTTGGTATATGAGTTTTTGACCAAGGGCAGTTTGGATAATCATCTATTTAGGAGGGGTTCTTACTTTCAACCACTTTCTTGGAACATCCGTATGAAGGTTGCTCTTGATGCTGCTAAGGGTCTTGCGTATCTTCACAGTGATGAAGCAAAAGTGATATATCGAGACTTCAAAACCTCGAATGTATTGCTTGATTCGGTAAGCAAATCTCATCTCATTGACCTTACAATTTACTAG 696 0.4382 MGCCFSARIKAESPPRNGLSSKDGNKEEYGSNGQSTASTPTTVPQTPRTEGEILKSSNMKSFTYSELKIATRNFRPDSVVGEGGFGCVFKGWIDEQTLAPVKPGTGKVIAVKRLNQEGLQGHSEWLTEINYLGQLHHPNLVKLIGYCLEDDQRLLVYEFLTKGSLDNHLFRRGSYFQPLSWNIRMKVALDAAKGLAYLHSDEAKVIYRDFKTSNVLLDSVSKSHLIDLTIY. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g01008 231 ProSiteProfiles Protein kinase domain profile. 74 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g01008 231 Pfam Protein tyrosine and serine/threonine kinase 78 222 IPR001245 GO:0004672|GO:0006468
Seca7g01008 231 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Seca7g01008 231 MobiDBLite consensus disorder prediction 10 53 - -
Seca7g01008 231 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Seca7g01008 231 FunFam Serine/threonine-protein kinase BIK1 41 159 - -
Seca7g01008 231 MobiDBLite consensus disorder prediction 18 53 - -
Seca7g01008 231 PANTHER OS01G0588500 PROTEIN-RELATED 38 228 - -
Seca7g01008 231 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Seca7g01008 231 SUPERFAMILY Protein kinase-like (PK-like) 46 227 IPR011009 -
Seca7g01008 231 Gene3D Transferase(Phosphotransferase) domain 1 160 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g01008 Seca-Chr7 13100618 13104297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g01008 1 230 Glycoside Hydrolase AT3G07070 40.756 3.45e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca7g01008 PK_Tyr_Ser-Thr 5.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g01008 - - gmx:100800735 400.208