Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g00996 ATGGCAATAGTCAACACCATCACCACTGTTAACATCTTGACCCTTCTTCTTCTTCTCACCTCAACCGAAGCCAGAATCCCCGGTGTCTACTCCGGCGGGGCATGGCAAAGTGCACACGCCACCTTCTACGGTGGCAGCGACGCCTCCGGAACAATGGAATGTTGTTCAAATTTTTTTATTTTTTTTGTAGGAGGGGCATGTGGATATGGGAATTTGTATAGCCAAGGGTATGGTGTGAACACTGCAGCACTTAGCACAGCGTTGTTTAACAATGGGTTAAGCTGTGGGGCTTGTTTTGAGATTAAGTGTGCAGATGACCCTAGCTGGTGCCACGCTGGCAGTCCTTCGATATTGATAACCGCCACTAACTTTTGCCCTCCAAACTATGCTCTTCCCAGTGATAATGGAGGATGGTGTAACCCTCCTAGGCCCCACTTCGATCTCGCCATGCCCATGTTCCTTAAGATCGCTGAGTATCGTGCTGGCATCGTTCCTGTTTCTTACCGCCGGGTGCCTTGCAGGAAACAGGGAGGGATGAGGTTCACGATCAACGGTTTCCGTTATTTTAACTTGGTTTTGATCACCAACGTCGCGGGTGCAGGGGATATCGTGAGGACGAGCGTGAAAGGTTCAAAGACTGGGTGGATGAGCATGAGCAGAAACTGGGGTCAGAATTGGCAGTCAAACGCTGTTTTGGTTGGGCAGTCACTGTCGTTCAGGGTCACAGCCAGTGACCGGCGCACTTCCACCTCATTGAACATTGTTCCCTCTAATTGGCAATTTGGACAAACCTTCACTGGCAAGAATTTCAGGGTCTAG 819 0.4994 MAIVNTITTVNILTLLLLLTSTEARIPGVYSGGAWQSAHATFYGGSDASGTMECCSNFFIFFVGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCADDPSWCHAGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGMRFTINGFRYFNLVLITNVAGAGDIVRTSVKGSKTGWMSMSRNWGQNWQSNAVLVGQSLSFRVTASDRRTSTSLNIVPSNWQFGQTFTGKNFRV. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g00996 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 178 IPR007112 -
Seca7g00996 272 Gene3D - 22 174 IPR036908 -
Seca7g00996 272 FunFam Expansin 178 270 - -
Seca7g00996 272 Pfam Lytic transglycolase 81 168 IPR009009 -
Seca7g00996 272 FunFam Expansin 24 174 - -
Seca7g00996 272 PANTHER EXPANSIN-A15 22 270 IPR002963 GO:0009664
Seca7g00996 272 SMART dpbb_1 81 168 IPR007112 -
Seca7g00996 272 Pfam Expansin C-terminal domain 179 256 IPR007117 -
Seca7g00996 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 267 IPR007117 -
Seca7g00996 272 CDD DPBB_EXPA_N 35 173 - -
Seca7g00996 272 Gene3D - 179 270 IPR036749 -
Seca7g00996 272 PRINTS Expansin/Lol pI family signature 161 177 IPR007118 GO:0005576
Seca7g00996 272 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Seca7g00996 272 PRINTS Expansin/Lol pI family signature 253 267 IPR007118 GO:0005576
Seca7g00996 272 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Seca7g00996 272 SUPERFAMILY PHL pollen allergen 175 267 IPR036749 -
Seca7g00996 272 PRINTS Expansin signature 153 166 IPR002963 GO:0009664
Seca7g00996 272 PRINTS Expansin signature 224 245 IPR002963 GO:0009664
Seca7g00996 272 PRINTS Expansin signature 117 127 IPR002963 GO:0009664
Seca7g00996 272 PRINTS Expansin signature 136 153 IPR002963 GO:0009664
Seca7g00996 272 PRINTS Expansin signature 253 269 IPR002963 GO:0009664
Seca7g00996 272 PRINTS Expansin signature 189 210 IPR002963 GO:0009664
Seca7g00996 272 PRINTS Expansin signature 103 114 IPR002963 GO:0009664
Seca7g00996 272 PRINTS Expansin signature 76 90 IPR002963 GO:0009664
Seca7g00996 272 PRINTS Expansin signature 177 189 IPR002963 GO:0009664
Seca7g00996 272 SUPERFAMILY Barwin-like endoglucanases 34 196 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g00996 Seca-Chr7 13016887 13018985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g00996 12 272 Expansin Gene Family AT2G39700 82.759 1.13e-163 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g00996 - - gmx:100809018 491.886